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2ASS
Biol. Unit 3
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (178 KB)
Biol.Unit 3 (178 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SKP1-SKP2-CKS1 COMPLEX
Authors
:
B. Hao, N. Zhang, B. A. Schulman, G. Wu, M. Pagano, N. P. Pavletich
Date
:
24 Aug 05 (Deposition) - 18 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Biol. Unit 3: A,B,C (2x)
Keywords
:
Protein-Protein Complex, Lrr, Scf, Cell Cycle/Ligase/Protein Turnover Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Hao, N. Zheng, B. A. Schulman, G. Wu, J. J. Miller, M. Pagano, N. P. Pavletich
Structural Basis Of The Cks1-Dependent Recognition Of P27(Kip1) By The Scf(Skp2) Ubiquitin Ligase.
Mol. Cell V. 20 9 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
1b: BENZAMIDINE (BENb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:67 , HIS B:2199 , SER B:2203 , THR B:2225 , PRO C:3062
BINDING SITE FOR RESIDUE PO4 B 3
2
AC2
SOFTWARE
HOH C:72 , LYS C:3011 , ARG C:3020 , GLN C:3050 , SER C:3051 , TRP C:3054
BINDING SITE FOR RESIDUE PO4 C 4
3
AC3
SOFTWARE
ASN B:2190 , GLU B:2214 , GLY B:2215 , LEU C:3037 , MET C:3038 , SER C:3039 , HIS C:3056
BINDING SITE FOR RESIDUE PO4 B 5
4
AC4
SOFTWARE
HOH B:22 , HOH B:38 , ALA B:2227 , SER B:2254 , HIS C:3060 , GLU C:3063
BINDING SITE FOR RESIDUE BEN B 1
5
AC5
SOFTWARE
PHE B:2169 , VAL B:2192 , TYR C:3057 , MET C:3058
BINDING SITE FOR RESIDUE BEN C 2
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051999 (F1014L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051999
F
14
L
SKP1_HUMAN
Polymorphism
11538034
A
F
1014
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CKS_1 (C:3008-3026)
2: CKS_2 (C:3060-3070)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CKS_1
PS00944
Cyclin-dependent kinases regulatory subunits signature 1.
CKS1_HUMAN
8-26
2
C:3008-3026
2
CKS_2
PS00945
Cyclin-dependent kinases regulatory subunits signature 2.
CKS1_HUMAN
60-70
2
C:3060-3070
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d2assb1 (B:2095-2133)
2a: SCOP_d2assa2 (A:1085-1160)
3a: SCOP_d2assc_ (C:)
4a: SCOP_d2assa1 (A:1002-1059)
5a: SCOP_d2assb2 (B:2134-2419)
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)
Protein Domains
(
)
(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
F-box domain
(12)
Superfamily
:
F-box domain
(12)
Family
:
F-box domain
(12)
Protein domain
:
Skp2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2assb1
B:2095-2133
Fold
:
Skp1 dimerisation domain-like
(18)
Superfamily
:
Skp1 dimerisation domain-like
(18)
Family
:
Skp1 dimerisation domain-like
(13)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d2assa2
A:1085-1160
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cell cycle regulatory proteins
(11)
Superfamily
:
Cell cycle regulatory proteins
(11)
Family
:
Cell cycle regulatory proteins
(11)
Protein domain
:
CksHs1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
3a
d2assc_
C:
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
4a
d2assa1
A:1002-1059
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
RNI-like
(17)
Family
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Protein domain
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
5a
d2assb2
B:2134-2419
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2assC00 (C:3005-3073)
2a: CATH_2assA00 (A:1002-1160)
3a: CATH_2assB00 (B:2095-2419)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cyclin-Dependent Kinase Subunit Type 2
(9)
Homologous Superfamily
:
Cyclin-Dependent Kinase Subunit Type 2
(9)
Human (Homo sapiens)
(6)
1a
2assC00
C:3005-3073
Topology
:
Potassium Channel Kv1.1; Chain A
(53)
Homologous Superfamily
:
Potassium Channel Kv1.1; Chain A
(53)
Human (Homo sapiens)
(30)
2a
2assA00
A:1002-1160
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Human (Homo sapiens)
(26)
3a
2assB00
B:2095-2419
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Pfam Domains
(0, 0)
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Asym.Unit (97 KB)
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