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2ASS
Biol. Unit 1
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (178 KB)
Biol.Unit 3 (178 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SKP1-SKP2-CKS1 COMPLEX
Authors
:
B. Hao, N. Zhang, B. A. Schulman, G. Wu, M. Pagano, N. P. Pavletich
Date
:
24 Aug 05 (Deposition) - 18 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Biol. Unit 3: A,B,C (2x)
Keywords
:
Protein-Protein Complex, Lrr, Scf, Cell Cycle/Ligase/Protein Turnover Complex
(Keyword Search:
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)
Reference
:
B. Hao, N. Zheng, B. A. Schulman, G. Wu, J. J. Miller, M. Pagano, N. P. Pavletich
Structural Basis Of The Cks1-Dependent Recognition Of P27(Kip1) By The Scf(Skp2) Ubiquitin Ligase.
Mol. Cell V. 20 9 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
1b: BENZAMIDINE (BENb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEN
2
Ligand/Ion
BENZAMIDINE
2
PO4
3
Ligand/Ion
PHOSPHATE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:67 , HIS B:2199 , SER B:2203 , THR B:2225 , PRO C:3062
BINDING SITE FOR RESIDUE PO4 B 3
2
AC2
SOFTWARE
HOH C:72 , LYS C:3011 , ARG C:3020 , GLN C:3050 , SER C:3051 , TRP C:3054
BINDING SITE FOR RESIDUE PO4 C 4
3
AC3
SOFTWARE
ASN B:2190 , GLU B:2214 , GLY B:2215 , LEU C:3037 , MET C:3038 , SER C:3039 , HIS C:3056
BINDING SITE FOR RESIDUE PO4 B 5
4
AC4
SOFTWARE
HOH B:22 , HOH B:38 , ALA B:2227 , SER B:2254 , HIS C:3060 , GLU C:3063
BINDING SITE FOR RESIDUE BEN B 1
5
AC5
SOFTWARE
PHE B:2169 , VAL B:2192 , TYR C:3057 , MET C:3058
BINDING SITE FOR RESIDUE BEN C 2
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051999 (F1014L, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051999
F
14
L
SKP1_HUMAN
Polymorphism
11538034
A
F
1014
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CKS_1 (C:3008-3026)
2: CKS_2 (C:3060-3070)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CKS_1
PS00944
Cyclin-dependent kinases regulatory subunits signature 1.
CKS1_HUMAN
8-26
1
C:3008-3026
2
CKS_2
PS00945
Cyclin-dependent kinases regulatory subunits signature 2.
CKS1_HUMAN
60-70
1
C:3060-3070
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d2assb1 (B:2095-2133)
2a: SCOP_d2assa2 (A:1085-1160)
3a: SCOP_d2assc_ (C:)
4a: SCOP_d2assa1 (A:1002-1059)
5a: SCOP_d2assb2 (B:2134-2419)
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)
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)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
F-box domain
(12)
Superfamily
:
F-box domain
(12)
Family
:
F-box domain
(12)
Protein domain
:
Skp2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2assb1
B:2095-2133
Fold
:
Skp1 dimerisation domain-like
(18)
Superfamily
:
Skp1 dimerisation domain-like
(18)
Family
:
Skp1 dimerisation domain-like
(13)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d2assa2
A:1085-1160
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cell cycle regulatory proteins
(11)
Superfamily
:
Cell cycle regulatory proteins
(11)
Family
:
Cell cycle regulatory proteins
(11)
Protein domain
:
CksHs1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
3a
d2assc_
C:
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
4a
d2assa1
A:1002-1059
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
RNI-like
(17)
Family
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Protein domain
:
Cyclin A/CDK2-associated p19, Skp2
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
5a
d2assb2
B:2134-2419
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2assC00 (C:3005-3073)
2a: CATH_2assA00 (A:1002-1160)
3a: CATH_2assB00 (B:2095-2419)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cyclin-Dependent Kinase Subunit Type 2
(9)
Homologous Superfamily
:
Cyclin-Dependent Kinase Subunit Type 2
(9)
Human (Homo sapiens)
(6)
1a
2assC00
C:3005-3073
Topology
:
Potassium Channel Kv1.1; Chain A
(53)
Homologous Superfamily
:
Potassium Channel Kv1.1; Chain A
(53)
Human (Homo sapiens)
(30)
2a
2assA00
A:1002-1160
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Human (Homo sapiens)
(26)
3a
2assB00
B:2095-2419
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Asymmetric Unit 1
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Asym.Unit (97 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (178 KB)
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