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2ARR
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
HUMAN PLASMINOGEN ACTIVATOR INHIBITOR-2.[LOOP (66-98) DELETION MUTANT] COMPLEXED WITH PEPTIDE N-ACETYL-TEAAAGMGGVMTGR-OH
Authors
:
D. A. Di Giusto, A. P. Sutherland, L. Jankova, S. J. Harrop, P. M. Curmi,
Date
:
21 Aug 05 (Deposition) - 11 Jul 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (1x)
Keywords
:
Serpin, Peptide Binding, Inhibitor, Hydrolase Inhibitor-Peptide Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Di Giusto, A. P. Sutherland, L. Jankova, S. J. Harrop, P. M. Curmi G. C. King
Plasminogen Activator Inhibitor-2 Is Highly Tolerant To P8 Residue Substitution--Implications For Serpin Mechanistic Model And Prediction Of Nssnp Activities
J. Mol. Biol. V. 353 1069 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:206 , TRP A:208 , VAL A:362 , ASN A:363 , GLU A:365 , THR P:345
BINDING SITE FOR RESIDUE ACE P 344
2
AC2
SOFTWARE
SER A:31 , SER A:34 , ILE A:35 , THR A:38 , MET A:39 , LYS A:180 , LEU A:184 , SER A:189 , ASP A:193 , THR A:194 , ARG A:195 , MET A:196 , VAL A:197 , LEU A:198 , VAL A:199 , ASN A:200 , ALA A:201 , VAL A:202 , TYR A:203 , PHE A:204 , LYS A:205 , GLY A:206 , TRP A:208 , TYR A:258 , LYS A:335 , ALA A:338 , PHE A:340 , ASN A:347 , ASP A:348 , LEU A:349 , PHE A:350 , LEU A:351 , SER A:352 , GLU A:353 , VAL A:354 , PHE A:355 , HIS A:356 , GLN A:357 , ALA A:358 , MET A:359 , VAL A:360 , ASP A:361 , PHE A:408 , HOH A:470 , HOH P:78 , HOH P:80 , HOH P:292 , ACE P:344
BINDING SITE FOR CHAIN P OF 14-MER FROM PLASMINOGEN ACTIVATOR INHIBITOR-2
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011743 (N120D, chain A, )
2: VAR_014173 (R229H, chain A, )
3: VAR_051946 (G352A, chain P, )
4: VAR_011744 (N404K, chain A, )
5: VAR_011745 (S413C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011743
N
120
D
PAI2_HUMAN
Polymorphism
6098
A
N
120
D
2
UniProt
VAR_014173
R
229
H
PAI2_HUMAN
Polymorphism
6100
A
R
229
H
3
UniProt
VAR_051946
G
374
A
PAI2_HUMAN
Polymorphism
34066931
P
G
352
A
4
UniProt
VAR_011744
N
404
K
PAI2_HUMAN
Polymorphism
6103
A
N
404
K
5
UniProt
VAR_011745
S
413
C
PAI2_HUMAN
Polymorphism
6104
A
S
413
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SERPIN (A:388-398)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
PAI2_HUMAN
388-398
1
A:388-398
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Exons
(7, 8)
Info
All Exons
Exon 1.5 (A:3-56 | -)
Exon 1.7 (A:57-63 | -)
Exon 1.8c (A:102-139 | -)
Exon 1.9b (A:140-179 | -)
Exon 1.10 (A:179-226 (gaps) | -)
Exon 1.11b (A:227-281 (gaps) | -)
Exon 1.12b (A:282-415 (gaps) | P:344-358)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.5
2: Boundary 1.5/1.7
3: Boundary 1.7/1.8c
4: Boundary 1.8c/1.9b
5: Boundary 1.9b/1.10
6: Boundary 1.10/1.11b
7: Boundary 1.11b/1.12b
8: Boundary 1.12b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000299502
2a
ENSE00001913834
chr18:
61554934-61555004
71
PAI2_HUMAN
-
0
0
-
-
1.5
ENST00000299502
5
ENSE00001743384
chr18:
61558670-61558846
177
PAI2_HUMAN
1-56
56
1
A:3-56
-
54
-
1.7
ENST00000299502
7
ENSE00001591590
chr18:
61562498-61562617
120
PAI2_HUMAN
57-96
40
1
A:57-63
-
7
-
1.8c
ENST00000299502
8c
ENSE00001102622
chr18:
61564325-61564453
129
PAI2_HUMAN
97-139
43
1
A:102-139
-
38
-
1.9b
ENST00000299502
9b
ENSE00002141382
chr18:
61564961-61565078
118
PAI2_HUMAN
140-179
40
1
A:140-179
-
40
-
1.10
ENST00000299502
10
ENSE00002158595
chr18:
61568974-61569116
143
PAI2_HUMAN
179-226
48
1
A:179-226 (gaps)
-
48
-
1.11b
ENST00000299502
11b
ENSE00002169488
chr18:
61569638-61569802
165
PAI2_HUMAN
227-281
55
1
A:227-281 (gaps)
-
55
-
1.12b
ENST00000299502
12b
ENSE00001812472
chr18:
61570135-61571124
990
PAI2_HUMAN
282-415
134
2
A:282-415 (gaps)
P:344-358
134
15
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2arra_ (A:)
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Protein Domains
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(
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(
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(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Serpins
(120)
Superfamily
:
Serpins
(120)
Family
:
Serpins
(100)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d2arra_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2arrA01 (A:3-207,A:310-364)
2a: CATH_2arrA02 (A:208-309,A:382-411)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antithrombin; Chain I, domain 2
(100)
Homologous Superfamily
:
Antithrombin, subunit I, domain 2
(100)
Human (Homo sapiens)
(80)
1a
2arrA01
A:3-207,A:310-364
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Alpha-1-antitrypsin; domain 1
(101)
Homologous Superfamily
:
Alpha-1-antitrypsin, domain 1
(101)
Human (Homo sapiens)
(81)
2a
2arrA02
A:208-309,A:382-411
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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