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2AR9
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DIMERIC CASPASE-9
Authors
:
Y. Chao, E. N. Shiozaki, S. M. Srinivassula, D. J. Rigotti, R. Fairman, Y
Date
:
19 Aug 05 (Deposition) - 11 Oct 05 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Caspase, Caspase Activation, Initiator Caspase, Cysteine Protease, Engineered Caspase-9, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chao, E. N. Shiozaki, S. M. Srinivassula, D. J. Rigotti, R. Fairman, Y. Shi
Engineering A Dimeric Caspase-9: A Re-Evaluation Of The Induced Proximity Model For Caspase Activation
Plos Biol. V. 3 1079 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: D-MALATE (MLTa)
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Label:
No.
Name
Count
Type
Full Name
1
MLT
1
Ligand/Ion
D-MALATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:354 , ARG A:355
BINDING SITE FOR RESIDUE MLT A 668
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_015420 (R173H, chain A/B, )
2: VAR_016131 (G176R, chain A/B, )
3: VAR_022053 (I185M, chain A/B, )
4: VAR_016132 (R192C, chain A/B, )
5: VAR_015421 (R221R, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015420
R
173
H
CASP9_HUMAN
Polymorphism
2308950
A/B
R
173
H
2
UniProt
VAR_016131
G
176
R
CASP9_HUMAN
Polymorphism
2308949
A/B
G
176
R
3
UniProt
VAR_022053
I
185
M
CASP9_HUMAN
Polymorphism
9282624
A/B
I
185
M
4
UniProt
VAR_016132
R
192
C
CASP9_HUMAN
Polymorphism
2308939
A/B
R
192
C
5
UniProt
VAR_015421
Q
221
R
CASP9_HUMAN
Polymorphism
1052576
A/B
R
221
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:159-286,B:159-289)
2: CASPASE_HIS (A:224-238,B:224-238)
3: CASPASE_CYS (A:278-286,B:278-289)
4: CASPASE_P10 (A:335-395,B:335-395)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP9_HUMAN
159-291
2
A:159-286
B:159-289
-
-
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP9_HUMAN
224-238
2
A:224-238
B:224-238
-
-
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP9_HUMAN
278-289
2
A:278-286
B:278-289
-
-
4
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP9_HUMAN
331-395
2
A:335-395
B:335-395
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2ar9a_ (A:)
1b: SCOP_d2ar9b_ (B:)
1c: SCOP_d2ar9c_ (C:)
1d: SCOP_d2ar9d_ (D:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
automated matches
(12)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2ar9a_
A:
1b
d2ar9b_
B:
1c
d2ar9c_
C:
1d
d2ar9d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2ar9A00 (A:140-416)
1b: CATH_2ar9C00 (C:140-416)
1c: CATH_2ar9D00 (D:140-416)
1d: CATH_2ar9B00 (B:140-416)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
1a
2ar9A00
A:140-416
1b
2ar9C00
C:140-416
1c
2ar9D00
D:140-416
1d
2ar9B00
B:140-416
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
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