PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2AQ7
Biol. Unit 2
Info
Asym.Unit (253 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (126 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE-ACTIVITY RELATIONSHIPS AT THE 5-POSIITON OF THIOLACTOMYCIN: AN INTACT 5(R)-ISOPRENE UNIT IS REQUIRED FOR ACTIVITY AGAINST THE CONDENSING ENZYMES FROM MYCOBACTERIUM TUBERCULOSIS AND ESCHERICHIA COLI
Authors
:
P. Kim, Y. M. Zhang, G. Shenoy, Q. A. Nguyen, H. I. Boshoff, U. H. Manjunatha, M. B. Goodwin, J. Lonsdale, A. C. Price, D. J. Miller
Date
:
17 Aug 05 (Deposition) - 17 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fabb-Ligand Active-Site Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kim, Y. M. Zhang, G. Shenoy, Q. A. Nguyen, H. I. Boshoff, U. H. Manjunatha, M. B. Goodwin, J. Lonsdale, A. C. Price, D. J. Miller, K. Duncan, S. W. White, C. O. Rock, C. E. Barry Iii, C. S. Dowd
Structure-Activity Relationships At The 5-Position Of Thiolactomycin: An Intact (5R)-Isoprene Unit Is Required For Activity Against The Condensing Enzymes From Mycobacterium Tuberculosis And Escherichia Coli
J. Med. Chem. V. 49 159 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: (5R)-4-HYDROXY-3,5-DIMETHYL-5-[(1E... (TL5a)
1b: (5R)-4-HYDROXY-3,5-DIMETHYL-5-[(1E... (TL5b)
1c: (5R)-4-HYDROXY-3,5-DIMETHYL-5-[(1E... (TL5c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TL5
1
Ligand/Ion
(5R)-4-HYDROXY-3,5-DIMETHYL-5-[(1E,3E)-2-METHYLPENTA-1,3-DIENYL]THIOPHEN-2(5H)-ONE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
CYS D:163 , PHE D:229 , ASP D:268 , MET D:269 , VAL D:270 , ALA D:271 , PRO D:272 , HIS D:298 , THR D:300 , HIS D:333 , PHE D:390 , GLY D:391 , PHE D:392 , GLY D:394 , HOH D:694 , HOH D:702
BINDING SITE FOR RESIDUE TL5 D 603
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain C/D, )
2: VAR_FABB_ECOLI_002 (S140F, chain C/D, )
3: VAR_FABB_ECOLI_003 (G299S, chain C/D, )
4: VAR_FABB_ECOLI_004 (A329V, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
C/D
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
C/D
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
C/D
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
C/D
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (C:154-170,D:154-170)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
2
-
-
C:154-170
D:154-170
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2aq7a1 (A:1-253)
1b: SCOP_d2aq7a2 (A:254-404)
1c: SCOP_d2aq7b1 (B:2-253)
1d: SCOP_d2aq7b2 (B:254-404)
1e: SCOP_d2aq7c1 (C:2-253)
1f: SCOP_d2aq7c2 (C:254-404)
1g: SCOP_d2aq7d1 (D:2-253)
1h: SCOP_d2aq7d2 (D:254-404)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d2aq7a1
A:1-253
1b
d2aq7a2
A:254-404
1c
d2aq7b1
B:2-253
1d
d2aq7b2
B:254-404
1e
d2aq7c1
C:2-253
1f
d2aq7c2
C:254-404
1g
d2aq7d1
D:2-253
1h
d2aq7d2
D:254-404
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2aq7A02 (A:260-404)
1b: CATH_2aq7C02 (C:260-404)
1c: CATH_2aq7D02 (D:260-404)
1d: CATH_2aq7A01 (A:6-259)
1e: CATH_2aq7B01 (B:6-259)
1f: CATH_2aq7C01 (C:6-259)
1g: CATH_2aq7D01 (D:6-259)
1h: CATH_2aq7B02 (B:260-404)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(5)
1a
2aq7A02
A:260-404
1b
2aq7C02
C:260-404
1c
2aq7D02
D:260-404
1d
2aq7A01
A:6-259
1e
2aq7B01
B:6-259
1f
2aq7C01
C:6-259
1g
2aq7D01
D:6-259
1h
2aq7B02
B:260-404
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2AQ7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help