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2APH
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PGRP-IALPHAC IN COMPLEX WITH MURAMYL PENTAPEPTIDE
Authors
:
R. Guan, A. Roychowdjury, G. Boons, R. A. Mariuzza
Date
:
16 Aug 05 (Deposition) - 27 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Pgrps, Lys-Type, Peptidoglycan, Complex, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Guan, P. H. Brown, C. P. Swaminathan, A. Roychowdhury, G. J. Boons, R. A. Mariuzza
Crystal Structure Of Human Peptidoglycan Recognition Protei I Alpha Bound To A Muramyl Pentapeptide From Gram-Positive Bacteria.
Protein Sci. V. 15 1199 2006
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: BETA-N-ACETYLMURAMIC ACID (AMUa)
1b: BETA-N-ACETYLMURAMIC ACID (AMUb)
2a: D-ALANINE (DALa)
2b: D-ALANINE (DALb)
2c: D-ALANINE (DALc)
2d: D-ALANINE (DALd)
3a: 4-AMIDO-4-CARBAMOYL-BUTYRIC ACID (GMAa)
3b: 4-AMIDO-4-CARBAMOYL-BUTYRIC ACID (GMAb)
4a: AMINO GROUP (NH2a)
4b: AMINO GROUP (NH2b)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
AMU
2
Mod. Amino Acid
BETA-N-ACETYLMURAMIC ACID
2
DAL
4
Mod. Amino Acid
D-ALANINE
3
GMA
2
Mod. Amino Acid
4-AMIDO-4-CARBAMOYL-BUTYRIC ACID
4
NH2
2
Mod. Amino Acid
AMINO GROUP
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:309 , HIS A:338 , HOH A:923 , HOH A:966
BINDING SITE FOR RESIDUE SO4 A 900
2
AC2
SOFTWARE
SER B:334 , PHE B:339 , HIS B:341 , HOH B:943
BINDING SITE FOR RESIDUE SO4 B 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(4, 8)
Info
All Exons
Exon 1.4 (A:177-177 | B:177-177)
Exon 1.5 (A:177-243 | B:177-243)
Exon 1.6 (A:243-283 | B:243-283)
Exon 1.7 (A:283-341 | B:283-341)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000290722
1
ENSE00001072539
chr1:
153283194-153283087
108
PGRP3_HUMAN
1-19
19
0
-
-
1.2
ENST00000290722
2
ENSE00001072538
chr1:
153279743-153279542
202
PGRP3_HUMAN
19-86
68
0
-
-
1.3
ENST00000290722
3
ENSE00001615390
chr1:
153277541-153277423
119
PGRP3_HUMAN
86-126
41
0
-
-
1.4
ENST00000290722
4
ENSE00001046162
chr1:
153276485-153276333
153
PGRP3_HUMAN
126-177
52
2
A:177-177
B:177-177
1
1
1.5
ENST00000290722
5
ENSE00001046175
chr1:
153275083-153274885
199
PGRP3_HUMAN
177-243
67
2
A:177-243
B:177-243
67
67
1.6
ENST00000290722
6
ENSE00001046182
chr1:
153271707-153271589
119
PGRP3_HUMAN
243-283
41
2
A:243-283
B:243-283
41
41
1.7
ENST00000290722
7
ENSE00001046177
chr1:
153270610-153270338
273
PGRP3_HUMAN
283-341
59
2
A:283-341
B:283-341
59
59
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2apha_ (A:)
1b: SCOP_d2aphb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
N-acetylmuramoyl-L-alanine amidase-like
(59)
Superfamily
:
N-acetylmuramoyl-L-alanine amidase-like
(59)
Family
:
N-acetylmuramoyl-L-alanine amidase-like
(53)
Protein domain
:
Peptidoglycan recognition protein I-alpha
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2apha_
A:
1b
d2aphb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (65 KB)
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Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 3
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