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Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
HISTAMINE METHYLTRANSFERASE COMPLEXED WITH THE ANTIFOLATE DRUG METOPRINE
Authors
:
J. R. Horton, K. Sawada, M. Nishibori, X. Cheng
Date
:
14 Aug 05 (Deposition) - 13 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.48
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Classic Methyltransferase Fold, Protein-Drug Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Horton, K. Sawada, M. Nishibori, X. Cheng
Structural Basis For Inhibition Of Histamine N-Methyltransferase By Diverse Drugs
J. Mol. Biol. V. 353 334 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)BUTYL IMIDOTHIOCA... (4DIa)
1b: 4-(DIMETHYLAMINO)BUTYL IMIDOTHIOCA... (4DIb)
2a: 5-(3,4-DICHLOROPHENYL)-6-METHYLPYR... (C2Ma)
2b: 5-(3,4-DICHLOROPHENYL)-6-METHYLPYR... (C2Mb)
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Label:
No.
Name
Count
Type
Full Name
1
4DI
2
Ligand/Ion
4-(DIMETHYLAMINO)BUTYL IMIDOTHIOCARBAMATE
2
C2M
2
Ligand/Ion
5-(3,4-DICHLOROPHENYL)-6-METHYLPYRIMIDINE-2,4-DIAMINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:60 , GLU B:89 , THR B:119 , ILE B:142 , MET B:144
BINDING SITE FOR RESIDUE 4DI B 300
2
AC2
SOFTWARE
TYR A:15 , MET A:144
BINDING SITE FOR RESIDUE 4DI A 301
3
AC3
SOFTWARE
TYR B:15 , GLU B:28 , GLN B:143 , TYR B:146 , TYR B:147 , TRP B:179 , TRP B:183 , GLN B:197 , TYR B:198
BINDING SITE FOR RESIDUE C2M B 400
4
AC4
SOFTWARE
TYR A:15 , GLU A:28 , GLN A:143 , TYR A:146 , TYR A:147 , VAL A:173 , TRP A:179 , TRP A:183 , GLN A:197 , TYR A:198 , HOH A:423
BINDING SITE FOR RESIDUE C2M A 401
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010252 (T105I, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010252
T
105
I
HNMT_HUMAN
Polymorphism
1801105
A/B
T
105
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(6, 12)
Info
All Exons
Exon 1.2a (A:5-46 | B:5-46)
Exon 1.5 (A:46-64 | B:46-64)
Exon 1.9 (A:64-100 | B:64-100)
Exon 1.10 (A:100-143 | B:100-143)
Exon 1.12 (A:144-175 | B:144-175)
Exon 1.13c (A:175-292 | B:175-292)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.5
3: Boundary 1.5/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.12
6: Boundary 1.12/1.13c
7: Boundary 1.13c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000280097
2a
ENSE00001824410
chr2:
138721880-138722198
319
HNMT_HUMAN
1-46
46
2
A:5-46
B:5-46
42
42
1.5
ENST00000280097
5
ENSE00000995392
chr2:
138727735-138727787
53
HNMT_HUMAN
46-64
19
2
A:46-64
B:46-64
19
19
1.9
ENST00000280097
9
ENSE00000995399
chr2:
138758488-138758595
108
HNMT_HUMAN
64-100
37
2
A:64-100
B:64-100
37
37
1.10
ENST00000280097
10
ENSE00000995393
chr2:
138759634-138759764
131
HNMT_HUMAN
100-143
44
2
A:100-143
B:100-143
44
44
1.12
ENST00000280097
12
ENSE00000995397
chr2:
138762702-138762795
94
HNMT_HUMAN
144-175
32
2
A:144-175
B:144-175
32
32
1.13c
ENST00000280097
13c
ENSE00001071685
chr2:
138771345-138773930
2586
HNMT_HUMAN
175-292
118
2
A:175-292
B:175-292
118
118
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2aova_ (A:)
1b: SCOP_d2aovb_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Histamine methyltransferase
(7)
Protein domain
:
Histamine methyltransferase
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2aova_
A:
1b
d2aovb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2aovA00 (A:5-292)
1b: CATH_2aovB00 (B:5-292)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Human (Homo sapiens)
(49)
1a
2aovA00
A:5-292
1b
2aovB00
B:5-292
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Pfam Domains
(0, 0)
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all PFAM domains
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