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2AOB
Biol. Unit 6
Info
Asym.Unit (93 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (20 KB)
Biol.Unit 3 (25 KB)
Biol.Unit 4 (21 KB)
Biol.Unit 5 (42 KB)
Biol.Unit 6 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF A HIGH-AFFINITY MACROCYCLIC PEPTIDE MIMETIC IN COMPLEX WITH THE GRB2 SH2 DOMAIN
Authors
:
J. Phan, Z. D. Shi, T. R. Burke, D. S. Waugh
Date
:
12 Aug 05 (Deposition) - 04 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: C,D (1x)
Biol. Unit 6: A,B (1x)
Keywords
:
Grb2 Sh2, Peptide Mimetic, Domain Swapping, Kinase Signalling, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Phan, Z. D. Shi, T. R. Burke, D. S. Waugh
Crystal Structures Of A High-Affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain.
J. Mol. Biol. V. 353 104 2005
[
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sa)
1b: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sb)
1c: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sc)
1d: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sd)
1e: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Se)
1f: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sf)
1g: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sg)
1h: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sh)
1i: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Si)
1j: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sj)
1k: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sk)
1l: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2... (S1Sl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
S1S
6
Ligand/Ion
2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9-(CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL)PHENYL)MALONIC ACID
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:67 , ARG A:86 , SER A:88 , GLU A:89 , SER A:90 , SER A:96 , GLN A:106 , HIS A:107 , PHE A:108 , LYS A:109 , LEU A:120 , HOH A:1719 , HOH A:1726 , HOH A:1791 , HOH A:1792 , HOH A:1793 , S1S C:2201 , HOH C:2634 , ARG D:142
BINDING SITE FOR RESIDUE S1S A 1201
02
AC2
SOFTWARE
S1S A:1501 , HOH A:1703 , HOH A:1708 , HOH A:1733 , ARG B:67 , ARG B:86 , SER B:96 , GLN B:106 , HIS B:107 , PHE B:108 , LYS B:109 , LEU B:111 , LEU B:120 , TRP B:121 , HOH B:1309 , HOH B:1330 , HOH B:1344 , ASN C:143 , S1S C:2401 , S1S C:2501 , HOH C:2648 , S1S D:2301 , HOH D:2702 , HOH D:2706
BINDING SITE FOR RESIDUE S1S B 1301
03
AC3
SOFTWARE
ASP A:113 , ALA A:115 , LYS A:117 , ARG A:142 , S1S A:1501 , HOH A:1703 , HOH A:1712 , HOH A:1764 , HOH A:1784 , TRP B:121 , VAL B:122 , LYS B:124 , PHE B:125 , GLU B:130 , HOH B:1302 , HOH B:1307 , LYS D:109 , LEU D:111 , S1S D:2301
BINDING SITE FOR RESIDUE S1S A 1401
04
AC4
SOFTWARE
GLY A:114 , LYS A:117 , S1S A:1401 , HOH A:1706 , HOH A:1764 , ASN B:126 , S1S B:1301 , HOH B:1341 , S1S C:2501 , HOH C:2692 , ARG D:112 , S1S D:2301 , HOH D:2762
BINDING SITE FOR RESIDUE S1S A 1501
05
AC5
SOFTWARE
PHE A:61 , GLU A:87 , GLY A:93 , PHE A:95 , TYR A:118 , S1S A:1701 , HOH A:1704 , HOH A:1740 , HOH A:1802 , SER B:127 , LEU B:128 , PHE C:62 , LYS C:64 , ILE C:65 , PRO C:66
BINDING SITE FOR RESIDUE S1S A 1601
06
AC6
SOFTWARE
HIS A:58 , PHE A:61 , S1S A:1601 , HOH A:1805 , HOH A:1806 , HOH A:1812 , ASN B:126 , SER B:127 , LYS C:69
BINDING SITE FOR RESIDUE S1S A 1701
07
AC7
SOFTWARE
S1S A:1201 , HOH A:1748 , ARG B:142 , ARG C:67 , ARG C:86 , SER C:88 , GLU C:89 , SER C:90 , SER C:96 , HIS C:107 , PHE C:108 , LYS C:109 , LEU C:120 , HOH C:2623 , HOH C:2625 , HOH C:2628 , HOH C:2634 , HOH C:2695
BINDING SITE FOR RESIDUE S1S C 2201
08
AC8
SOFTWARE
ARG A:142 , ASN A:143 , S1S A:1401 , S1S A:1501 , HOH A:1708 , S1S B:1301 , HOH B:1309 , S1S C:2501 , HOH C:2603 , HOH C:2607 , ARG D:67 , ARG D:86 , SER D:96 , GLN D:106 , HIS D:107 , PHE D:108 , LYS D:109 , LEU D:111 , LEU D:120 , TRP D:121 , HOH D:2702 , HOH D:2706 , HOH D:2748
BINDING SITE FOR RESIDUE S1S D 2301
09
AC9
SOFTWARE
LYS B:109 , LEU B:111 , S1S B:1301 , ASP C:113 , ALA C:115 , LYS C:117 , ARG C:142 , S1S C:2501 , HOH C:2607 , HOH C:2676 , HOH C:2688 , HOH C:2689 , TRP D:121 , VAL D:122 , LYS D:124 , PHE D:125 , GLU D:130 , HOH D:2713
BINDING SITE FOR RESIDUE S1S C 2401
10
BC1
SOFTWARE
S1S A:1501 , ARG B:112 , S1S B:1301 , ALA C:115 , LYS C:117 , S1S C:2401 , HOH C:2630 , ASN D:126 , S1S D:2301
BINDING SITE FOR RESIDUE S1S C 2501
11
BC2
SOFTWARE
PHE A:62 , LYS A:64 , ILE A:65 , PRO A:66 , GLU C:87 , GLY C:93 , PHE C:95 , TYR C:118 , HOH C:2605 , HOH C:2610 , HOH C:2612 , HOH C:2635 , SER D:127 , LEU D:128 , S1S D:2701
BINDING SITE FOR RESIDUE S1S C 2601
12
BC3
SOFTWARE
LYS A:69 , HIS C:58 , PHE C:61 , S1S C:2601 , ASN D:126 , SER D:127 , HOH D:2765
BINDING SITE FOR RESIDUE S1S D 2701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:60-151,B:60-151)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
GRB2_HUMAN
60-152
2
A:60-151
B:60-151
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2aoba_ (A:)
1b: SCOP_d2aobb_ (B:)
1c: SCOP_d2aobc_ (C:)
1d: SCOP_d2aobd_ (D:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d2aoba_
A:
1b
d2aobb_
B:
1c
d2aobc_
C:
1d
d2aobd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2aobA00 (A:56-151)
1b: CATH_2aobC00 (C:56-151)
1c: CATH_2aobB00 (B:59-151)
1d: CATH_2aobD00 (D:59-151)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
2aobA00
A:56-151
1b
2aobC00
C:56-151
1c
2aobB00
B:59-151
1d
2aobD00
D:59-151
[
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Pfam Domains
(0, 0)
Info
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Asymmetric Unit 1
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