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2AN9
Biol. Unit 1
Info
Asym.Unit (79 KB)
Biol.Unit 1 (213 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX WITH GDP
Authors
:
G. Hible, L. Renault, F. Schaeffer, P. Christova, A. Z. Radulescu, C. Ev A. M. Gilles, J. Cherfils
Date
:
11 Aug 05 (Deposition) - 30 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Transferase, Gmp Kinase, Guanylate Kinase, Oligomeric
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Hible, L. Renault, F. Schaeffer, P. Christova, A. Z. Radulescu, C. Evrin, A. M. Gilles, J. Cherfils
Calorimetric And Crystallographic Analysis Of The Oligomeri Structure Of Escherichia Coli Gmp Kinase
J. Mol. Biol. V. 352 1044 2005
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: GUANOSINE (GMPa)
2b: GUANOSINE (GMPb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
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Label:
No.
Name
Count
Type
Full Name
1
GDP
6
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GMP
6
Ligand/Ion
GUANOSINE
3
K
-1
Ligand/Ion
POTASSIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:38 , ASP A:102 , GDP A:601 , HOH A:623 , HOH A:625
BINDING SITE FOR RESIDUE K A 603
2
AC2
SOFTWARE
SER B:38 , ASP B:102 , GDP B:1601 , HOH B:1604 , HOH B:1605 , HOH B:1638
BINDING SITE FOR RESIDUE K B 1603
3
AC3
SOFTWARE
SER A:18 , SER A:38 , ARG A:42 , ARG A:45 , TYR A:54 , GLU A:73 , VAL A:77 , TYR A:82 , GLY A:83 , THR A:84 , ASP A:102 , ILE A:103 , ASP A:104 , GLY A:107 , K A:603 , HOH A:631 , HOH A:640 , HOH A:645 , HOH A:657 , HOH A:662 , HOH A:684
BINDING SITE FOR RESIDUE GDP A 601
4
AC4
SOFTWARE
LEU A:30 , TYR A:31 , GLN A:34 , THR A:95 , VAL A:97 , ARG A:133 , ARG A:134 , GLY A:137 , ARG A:138 , HOH A:615 , HOH A:626 , HOH A:634
BINDING SITE FOR RESIDUE GMP A 602
5
AC5
SOFTWARE
SER B:38 , ARG B:42 , ARG B:45 , TYR B:54 , GLU B:73 , TYR B:82 , GLY B:83 , THR B:84 , ASP B:102 , ILE B:103 , ASP B:104 , GLY B:107 , K B:1603 , HOH B:1637 , HOH B:1675 , HOH B:1676 , HOH B:1698
BINDING SITE FOR RESIDUE GDP B 1601
6
AC6
SOFTWARE
TYR B:31 , GLN B:34 , THR B:95 , VAL B:97 , ARG B:133 , ARG B:134 , GLY B:137 , ARG B:138 , HOH B:1624 , HOH B:1631 , HOH B:1670 , HOH B:1684
BINDING SITE FOR RESIDUE GMP B 1602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: GUANYLATE_KINASE_2 (A:4-184,B:4-184)
2: GUANYLATE_KINASE_1 (A:40-57,B:40-57)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GUANYLATE_KINASE_2
PS50052
Guanylate kinase-like domain profile.
KGUA_ECOLI
4-184
6
A:4-184
B:4-184
2
GUANYLATE_KINASE_1
PS00856
Guanylate kinase-like signature.
KGUA_ECOLI
40-57
6
A:40-57
B:40-57
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2an9a_ (A:)
1b: SCOP_d2an9b_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Guanylate kinase
(13)
Escherichia coli [TaxId: 562]
(6)
1a
d2an9a_
A:
1b
d2an9b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2an9A02 (A:37-96)
1b: CATH_2an9B02 (B:37-96)
2a: CATH_2an9A01 (A:2-36,A:97-206)
2b: CATH_2an9B01 (B:2-36,B:97-206)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Guanylate Kinase phosphate binding domain
(22)
Homologous Superfamily
:
Guanylate Kinase phosphate binding domain
(22)
Escherichia coli. Organism_taxid: 562.
(4)
1a
2an9A02
A:37-96
1b
2an9B02
B:37-96
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562.
(54)
2a
2an9A01
A:2-36,A:97-206
2b
2an9B01
B:2-36,B:97-206
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Pfam Domains
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