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2AMX
Asym. Unit
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Asym.Unit (134 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PLASMODIUM YOELII ADENOSINE DEAMINASE (PY02076)
Authors
:
A. Dong, M. Vedadi, G. Wasney, Y. Zhao, J. Lew, Z. Alam, M. Melone, I. Koeieradzki, A. M. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, A. Bochkarev, R. Hui, M. Amani, Structural Genomics Consortium (Sgc)
Date
:
10 Aug 05 (Deposition) - 20 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Plasmodium Yoelii Adenosine Deaminase (Py02076), Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
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No.
Name
Count
Type
Full Name
1
CO
5
Ligand/Ion
COBALT (II) ION
2
UNX
6
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:55 , HIS A:57 , HIS A:239 , ASP A:323
BINDING SITE FOR RESIDUE CO A 1000
02
AC2
SOFTWARE
HIS A:177 , GLU A:370
BINDING SITE FOR RESIDUE CO A 1002
03
AC3
SOFTWARE
HIS B:55 , HIS B:57 , HIS B:239 , ASP B:323
BINDING SITE FOR RESIDUE CO B 1000
04
AC4
SOFTWARE
HIS B:212 , LEU B:219 , HIS B:222 , HOH B:2177 , HOH B:2205
BINDING SITE FOR RESIDUE CO B 1001
05
AC5
SOFTWARE
ASN B:174 , HIS B:177 , GLU B:370
BINDING SITE FOR RESIDUE CO B 1002
06
AC6
SOFTWARE
HIS A:212 , ILE A:217 , HIS A:222
BINDING SITE FOR RESIDUE UNX A 2000
07
AC7
SOFTWARE
SER A:196 , GLY A:197 , PHE A:210 , VAL A:225 , HOH A:2109
BINDING SITE FOR RESIDUE UNX A 2001
08
AC8
SOFTWARE
ASP A:185 , GLY A:187 , SER A:192
BINDING SITE FOR RESIDUE UNX A 2003
09
AC9
SOFTWARE
HOH A:2047
BINDING SITE FOR RESIDUE UNX A 2004
10
BC1
SOFTWARE
HOH B:2019
BINDING SITE FOR RESIDUE UNX B 2005
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2amxa1 (A:20-376)
2a: SCOP_d2amxb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Adenosine/AMP deaminase
(36)
Protein domain
:
Adenosine deaminase (ADA)
(24)
Plasmodium yoelii [TaxId: 5861]
(1)
1a
d2amxa1
A:20-376
Protein domain
:
automated matches
(11)
Plasmodium yoelii [TaxId: 5861]
(1)
2a
d2amxb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (134 KB)
Header - Asym.Unit
Biol.Unit 1 (128 KB)
Header - Biol.Unit 1
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