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2AKA
Asym. Unit
Info
Asym.Unit (194 KB)
Biol.Unit 1 (189 KB)
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(1)
Title
:
STRUCTURE OF THE NUCLEOTIDE-FREE MYOSIN II MOTOR DOMAIN FROM DICTYOSTELIUM DISCOIDEUM FUSED TO THE GTPASE DOMAIN OF DYNAMIN 1 FROM RATTUS NORVEGICUS
Authors
:
T. F. Reubold, S. Eschenburg, A. Becker, M. Leonard, S. L. Schmid, R. B. Vallee, F. J. Kull, D. J. Manstein
Date
:
03 Aug 05 (Deposition) - 23 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,L
Biol. Unit 1: A,B,L (1x)
Keywords
:
Fusion Protein, Gtpase Domain, Dynamin, Myosin, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. F. Reubold, S. Eschenburg, A. Becker, M. Leonard, S. L. Schmid, R. B. Vallee, F. J. Kull, D. J. Manstein
Crystal Structure Of The Gtpase Domain Of Rat Dynamin 1.
Proc. Natl. Acad. Sci. Usa V. 102 13093 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: G_DYNAMIN_2 (B:28-294)
2: G_DYNAMIN_1 (B:57-66)
3: MYOSIN_MOTOR (A:86-759)
4: IQ (A:762-765)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_DYNAMIN_2
PS51718
Dynamin-type guanine nucleotide-binding (G) domain profile.
DYN1_RAT
28-294
1
B:28-294
2
G_DYNAMIN_1
PS00410
Dynamin-type guanine nucleotide-binding (G) domain signature.
DYN1_RAT
57-66
1
B:57-66
3
MYOSIN_MOTOR
PS51456
Myosin motor domain profile.
MYS2_DICDI
86-759
1
A:86-759
4
IQ
PS50096
IQ motif profile.
MYS2_DICDI
762-791
1
A:762-765
[
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Exons
(7, 7)
Info
All Exons
Exon 1.1 (B:6-54)
Exon 1.2 (B:54-79)
Exon 1.3 (B:79-129)
Exon 1.4 (B:129-197)
Exon 1.5 (B:197-230)
Exon 1.6 (B:230-283)
Exon 1.7 (B:284-304)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000047921
1
ENSRNOE00000284264
chr3:
11478452-11478253
200
DYN1_RAT
1-54
54
1
B:6-54
49
1.2
ENSRNOT00000047921
2
ENSRNOE00000121562
chr3:
11467053-11466980
74
DYN1_RAT
54-79
26
1
B:54-79
26
1.3
ENSRNOT00000047921
3
ENSRNOE00000353217
chr3:
11466707-11466558
150
DYN1_RAT
79-129
51
1
B:79-129
51
1.4
ENSRNOT00000047921
4
ENSRNOE00000301632
chr3:
11466305-11466102
204
DYN1_RAT
129-197
69
1
B:129-197
69
1.5
ENSRNOT00000047921
5
ENSRNOE00000358193
chr3:
11464828-11464730
99
DYN1_RAT
197-230
34
1
B:197-230
34
1.6
ENSRNOT00000047921
6
ENSRNOE00000310231
chr3:
11464625-11464465
161
DYN1_RAT
230-283
54
1
B:230-283
54
1.7
ENSRNOT00000047921
7
ENSRNOE00000351550
chr3:
11463052-11462910
143
DYN1_RAT
284-331
48
1
B:284-304
21
1.8
ENSRNOT00000047921
8
ENSRNOE00000317343
chr3:
11462795-11462660
136
DYN1_RAT
331-376
46
0
-
-
1.9
ENSRNOT00000047921
9
ENSRNOE00000433761
chr3:
11462532-11462465
68
DYN1_RAT
377-399
23
0
-
-
1.10
ENSRNOT00000047921
10
ENSRNOE00000320433
chr3:
11461487-11461349
139
DYN1_RAT
399-445
47
0
-
-
1.12
ENSRNOT00000047921
12
ENSRNOE00000124072
chr3:
11454185-11454099
87
DYN1_RAT
446-474
29
0
-
-
1.13
ENSRNOT00000047921
13
ENSRNOE00000124378
chr3:
11449591-11449521
71
DYN1_RAT
475-498
24
0
-
-
1.14
ENSRNOT00000047921
14
ENSRNOE00000335504
chr3:
11449334-11449283
52
DYN1_RAT
498-515
18
0
-
-
1.16
ENSRNOT00000047921
16
ENSRNOE00000341499
chr3:
11446955-11446842
114
DYN1_RAT
516-553
38
0
-
-
1.17
ENSRNOT00000047921
17
ENSRNOE00000292028
chr3:
11443470-11443361
110
DYN1_RAT
554-590
37
0
-
-
1.18a
ENSRNOT00000047921
18a
ENSRNOE00000125643
chr3:
11442301-11442190
112
DYN1_RAT
590-627
38
0
-
-
1.19
ENSRNOT00000047921
19
ENSRNOE00000320719
chr3:
11441808-11441797
12
DYN1_RAT
628-631
4
0
-
-
1.20b
ENSRNOT00000047921
20b
ENSRNOE00000120760
chr3:
11441494-11441324
171
DYN1_RAT
632-688
57
0
-
-
1.21
ENSRNOT00000047921
21
ENSRNOE00000121039
chr3:
11439345-11439104
242
DYN1_RAT
689-769
81
0
-
-
1.22
ENSRNOT00000047921
22
ENSRNOE00000242459
chr3:
11438757-11438542
216
DYN1_RAT
769-841
73
0
-
-
1.26
ENSRNOT00000047921
26
ENSRNOE00000434540
chr3:
11436260-11436256
5
DYN1_RAT
841-843
3
0
-
-
1.27b
ENSRNOT00000047921
27b
ENSRNOE00000309841
chr3:
11435939-11435878
62
DYN1_RAT
843-862
20
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2akab1 (B:6-304)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Dynamin G domain
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d2akab1
B:6-304
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2akaB00 (B:6-304)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Dictyostelium discoideum. Organism_taxid: 44689.
(1)
1a
2akaB00
B:6-304
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (194 KB)
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