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2AJS
Asym. Unit
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Asym.Unit (85 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COCAINE CATALYTIC ANTIBODY 7A1 FAB' IN COMPLEX WITH HEPTAETHYLENE GLYCOL
Authors
:
X. Zhu, I. A. Wilson
Date
:
02 Aug 05 (Deposition) - 14 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Catalytic Antibody, Fab, Cocaine, Hydrolytic, Heptaethylene Glycol, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, T. J. Dickerson, C. J. Rogers, G. F. Kaufmann, J. M. Mee, K. M. Mckenzie, K. D. Janda, I. A. Wilson
Complete Reaction Cycle Of A Cocaine Catalytic Antibody At Atomic Resolution.
Structure V. 14 205 2006
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
3a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR H:31 , ASN H:32 , HOH H:770 , HOH H:784 , HOH H:807 , LYS L:149
BINDING SITE FOR RESIDUE SO4 H 601
2
AC2
SOFTWARE
ALA H:34 , THR H:35A , TRP H:47 , TYR H:50 , TYR H:97 , TYR L:27D , TYR L:32 , PHE L:91 , VAL L:92 , PHE L:96 , HOH L:753
BINDING SITE FOR RESIDUE P33 H 701
3
AC3
SOFTWARE
PRO H:175 , THR H:186 , LEU H:187 , THR H:188 , LEU L:160 , SER L:162 , SER L:176 , THR L:178 , HOH L:699
BINDING SITE FOR RESIDUE GOL L 501
4
AC4
SOFTWARE
SER L:59 , ARG L:61 , LYS L:79 , HOH L:634 , HOH L:676
BINDING SITE FOR RESIDUE GOL L 502
5
AC5
SOFTWARE
ASP H:72 , THR H:73 , SER H:74 , LYS L:199 , SER L:201 , THR L:202 , HOH L:601
BINDING SITE FOR RESIDUE GOL L 503
6
AC6
SOFTWARE
ARG L:27 , SER L:27A , LYS L:27E , HOH L:554 , HOH L:631 , HOH L:678
BINDING SITE FOR RESIDUE GOL L 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:192-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
1
L:192-198
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ajsl1 (L:1-107)
2a: SCOP_d2ajsl2 (L:108-211)
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(
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)
(
)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d2ajsl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d2ajsl2
L:108-211
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2ajsL02 (L:109-211)
1b: CATH_2ajsH02 (H:114-228)
1c: CATH_2ajsL01 (L:1-108)
1d: CATH_2ajsH01 (H:1-113)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
2ajsL02
L:109-211
1b
2ajsH02
H:114-228
1c
2ajsL01
L:1-108
1d
2ajsH01
H:1-113
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (85 KB)
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