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2AJP
Biol. Unit 1
Info
Asym.Unit (102 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HUMAN PYRIDOXAL KINASE
Authors
:
S. Ismail, S. Dimov, A. Atanassova, W. Tempel, C. Arrowsmith, A. Edward M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomic Consortium (Sgc)
Date
:
02 Aug 05 (Deposition) - 09 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Pyridoxal Kinase, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ismail, S. Dimov, A. Atanassova, W. Tempel, C. Arrowsmith, A. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Crystal Structure Of A Human Pyridoxal Kinase
To Be Published
[
close entry info
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Hetero Components
(2, 21)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: UNKNOWN ATOM OR ION (UNXa)
3aa: UNKNOWN ATOM OR ION (UNXaa)
3ab: UNKNOWN ATOM OR ION (UNXab)
3ac: UNKNOWN ATOM OR ION (UNXac)
3ad: UNKNOWN ATOM OR ION (UNXad)
3ae: UNKNOWN ATOM OR ION (UNXae)
3af: UNKNOWN ATOM OR ION (UNXaf)
3ag: UNKNOWN ATOM OR ION (UNXag)
3ah: UNKNOWN ATOM OR ION (UNXah)
3ai: UNKNOWN ATOM OR ION (UNXai)
3aj: UNKNOWN ATOM OR ION (UNXaj)
3ak: UNKNOWN ATOM OR ION (UNXak)
3al: UNKNOWN ATOM OR ION (UNXal)
3am: UNKNOWN ATOM OR ION (UNXam)
3an: UNKNOWN ATOM OR ION (UNXan)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
3s: UNKNOWN ATOM OR ION (UNXs)
3t: UNKNOWN ATOM OR ION (UNXt)
3u: UNKNOWN ATOM OR ION (UNXu)
3v: UNKNOWN ATOM OR ION (UNXv)
3w: UNKNOWN ATOM OR ION (UNXw)
3x: UNKNOWN ATOM OR ION (UNXx)
3y: UNKNOWN ATOM OR ION (UNXy)
3z: UNKNOWN ATOM OR ION (UNXz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
UNX
20
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC6 (SOFTWARE)
15: BC7 (SOFTWARE)
16: BC8 (SOFTWARE)
17: BC9 (SOFTWARE)
18: CC1 (SOFTWARE)
19: CC2 (SOFTWARE)
20: CC3 (SOFTWARE)
21: CC4 (SOFTWARE)
22: CC7 (SOFTWARE)
23: DC2 (SOFTWARE)
24: DC4 (SOFTWARE)
25: DC5 (SOFTWARE)
26: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:118 , ANP A:501
BINDING SITE FOR RESIDUE MG A 401
02
AC3
SOFTWARE
GLY A:232 , THR A:233 , GLY A:234 , ANP A:501
BINDING SITE FOR RESIDUE UNX A 402
03
AC4
SOFTWARE
ARG A:6 , GLU A:34 , ASP A:36 , ARG B:16
BINDING SITE FOR RESIDUE UNX A 403
04
AC5
SOFTWARE
ASP A:36 , ARG B:16 , GLY B:17 , TYR B:18 , ARG B:22
BINDING SITE FOR RESIDUE UNX B 404
05
AC6
SOFTWARE
THR A:82 , GLY A:83 , ASP A:113 , TYR A:136
BINDING SITE FOR RESIDUE UNX A 405
06
AC7
SOFTWARE
VAL A:14 , ARG A:16 , GLY A:17 , ASN A:45 , HIS A:46 , GLU A:290
BINDING SITE FOR RESIDUE UNX A 406
07
AC8
SOFTWARE
HIS A:264 , GLN A:268
BINDING SITE FOR RESIDUE UNX A 407
08
AC9
SOFTWARE
GLN A:11 , GLY A:83 , TYR A:84 , ASP A:235
BINDING SITE FOR RESIDUE UNX A 408
09
BC1
SOFTWARE
TYR A:18 , VAL A:294 , GLN B:29 , PHE B:33 , ILE B:35
BINDING SITE FOR RESIDUE UNX B 409
10
BC2
SOFTWARE
ARG A:22 , THR A:25 , PHE A:26 , GLN B:29
BINDING SITE FOR RESIDUE UNX A 410
11
BC3
SOFTWARE
GLN A:29 , VAL A:30 , GLY A:32 , VAL B:294 , LYS B:297
BINDING SITE FOR RESIDUE UNX B 411
12
BC4
SOFTWARE
ASP A:36 , ALA A:37 , HIS B:13 , VAL B:14 , ILE B:15 , ARG B:22
BINDING SITE FOR RESIDUE UNX B 412
13
BC5
SOFTWARE
ASN A:75 , LYS A:76 , TYR A:77 , LEU A:101 , ASN A:105 , LEU A:108
BINDING SITE FOR RESIDUE UNX A 413
14
BC6
SOFTWARE
PRO A:142 , ALA A:144 , GLY A:179
BINDING SITE FOR RESIDUE UNX A 414
15
BC7
SOFTWARE
GLN A:165
BINDING SITE FOR RESIDUE UNX A 415
16
BC8
SOFTWARE
HIS A:46 , PRO A:286 , LEU A:289 , GLU A:290
BINDING SITE FOR RESIDUE UNX A 416
17
BC9
SOFTWARE
TYR A:18 , VAL A:231 , GLU A:290 , LEU A:291
BINDING SITE FOR RESIDUE UNX A 417
18
CC1
SOFTWARE
PRO A:249 , ASN A:250
BINDING SITE FOR RESIDUE UNX A 418
19
CC2
SOFTWARE
LEU A:199 , LYS A:225
BINDING SITE FOR RESIDUE UNX A 419
20
CC3
SOFTWARE
PHE A:33 , HIS A:246
BINDING SITE FOR RESIDUE UNX A 420
21
CC4
SOFTWARE
ASP A:113 , THR A:148 , THR A:186 , GLY A:234 , ANP A:501
BINDING SITE FOR RESIDUE UNX A 421
22
CC7
SOFTWARE
GLY A:17 , TYR A:18 , ARG A:22 , ASP B:36
BINDING SITE FOR RESIDUE UNX A 1404
23
DC2
SOFTWARE
GLN A:29 , ILE A:35 , TYR B:18 , ARG B:22 , VAL B:294
BINDING SITE FOR RESIDUE UNX A 1409
24
DC4
SOFTWARE
VAL A:294 , LYS A:297 , GLN B:29 , VAL B:30
BINDING SITE FOR RESIDUE UNX A 1411
25
DC5
SOFTWARE
HIS A:13 , VAL A:14 , ILE A:15 , ARG A:22 , ASP B:36 , ALA B:37
BINDING SITE FOR RESIDUE UNX A 1412
26
EC6
SOFTWARE
ASP A:113 , ASP A:118 , ASN A:150 , GLU A:153 , THR A:186 , SER A:187 , VAL A:201 , VAL A:226 , ALA A:228 , PHE A:230 , THR A:233 , GLY A:234 , PHE A:237 , LEU A:267 , MG A:401 , UNX A:402 , UNX A:421
BINDING SITE FOR RESIDUE ANP A 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ajpa_ (A:)
1b: SCOP_d2ajpb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
PfkB-like kinase
(20)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2ajpa_
A:
1b
d2ajpb_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ajpB00 (B:5-312)
1b: CATH_2ajpA00 (A:5-312)
View:
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.20, no name defined]
(73)
Human (Homo sapiens)
(10)
1a
2ajpB00
B:5-312
1b
2ajpA00
A:5-312
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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