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2AJF
Biol. Unit 2
Info
Asym.Unit (268 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (131 KB)
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(1)
Title
:
STRUCTURE OF SARS CORONAVIRUS SPIKE RECEPTOR-BINDING DOMAIN COMPLEXED WITH ITS RECEPTOR
Authors
:
F. Li, W. Li, M. Farzan, S. C. Harrison
Date
:
01 Aug 05 (Deposition) - 20 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Keywords
:
Antiparallel Beta Sheet, Extended Loop, Hydrolase-Viral Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Li, W. Li, M. Farzan, S. C. Harrison
Structure Of Sars Coronavirus Spike Receptor-Binding Domain Complexed With Receptor.
Science V. 309 1864 2005
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC8 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC8
SOFTWARE
LYS B:26 , ASN B:90 , NAG B:1091
BINDING SITE FOR RESIDUE NAG B 1090
2
AC9
SOFTWARE
NAG B:1090 , BMA B:1092
BINDING SITE FOR RESIDUE NAG B 1091
3
BC1
SOFTWARE
NAG B:1091 , THR F:402
BINDING SITE FOR RESIDUE BMA B 1092
4
BC2
SOFTWARE
ASN B:322
BINDING SITE FOR RESIDUE NAG B 1322
5
BC3
SOFTWARE
ASN F:330 , VAL F:354
BINDING SITE FOR RESIDUE NAG F 1330
6
BC6
SOFTWARE
HIS B:374 , HIS B:378 , GLU B:402 , HOH B:1909
BINDING SITE FOR RESIDUE ZN B 901
7
BC7
SOFTWARE
ARG B:169 , ASP B:499
BINDING SITE FOR RESIDUE CL B 1902
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_023082 (K26R, chain B, )
02: VAR_SPIKE_CVHSA_014 (K344R, chain F, )
03: VAR_SPIKE_CVHSA_015 (F360S, chain F, )
04: VAR_SPIKE_CVHSA_016 (R426G, chain F, )
05: VAR_SPIKE_CVHSA_017 (N437D, chain F, )
06: VAR_SPIKE_CVHSA_018 (L472P, chain F, )
07: VAR_SPIKE_CVHSA_019 (N479K, chain F, )
08: VAR_SPIKE_CVHSA_020 (D480G, chain F, )
09: VAR_SPIKE_CVHSA_021 (T487S, chain F, )
10: VAR_SPIKE_CVHSA_022 (F501Y, chain F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023082
K
26
R
ACE2_HUMAN
Polymorphism
4646116
B
K
26
R
02
UniProt
VAR_SPIKE_CVHSA_014
*
K
344
R
SPIKE_CVHSA
---
---
F
K
344
R
03
UniProt
VAR_SPIKE_CVHSA_015
*
F
360
S
SPIKE_CVHSA
---
---
F
F
360
S
04
UniProt
VAR_SPIKE_CVHSA_016
*
R
426
G
SPIKE_CVHSA
---
---
F
R
426
G
05
UniProt
VAR_SPIKE_CVHSA_017
*
N
437
D
SPIKE_CVHSA
---
---
F
N
437
D
06
UniProt
VAR_SPIKE_CVHSA_018
*
L
472
P
SPIKE_CVHSA
---
---
F
L
472
P
07
UniProt
VAR_SPIKE_CVHSA_019
*
N
479
K
SPIKE_CVHSA
---
---
F
N
479
K
08
UniProt
VAR_SPIKE_CVHSA_020
*
D
480
G
SPIKE_CVHSA
---
---
F
D
480
G
09
UniProt
VAR_SPIKE_CVHSA_021
*
T
487
S
SPIKE_CVHSA
---
---
F
T
487
S
10
UniProt
VAR_SPIKE_CVHSA_022
*
F
501
Y
SPIKE_CVHSA
---
---
F
F
501
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (B:371-380)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ACE2_HUMAN
371-380
1
-
B:371-380
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2ajfe1 (E:323-502)
1b: SCOP_d2ajff_ (F:)
2a: SCOP_d2ajfa_ (A:)
2b: SCOP_d2ajfb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SARS receptor-binding domain-like
(12)
Superfamily
:
SARS receptor-binding domain-like
(12)
Family
:
SARS receptor-binding domain-like
(12)
Protein domain
:
Spike protein S1
(8)
SARS coronavirus [TaxId: 227859]
(8)
1a
d2ajfe1
E:323-502
1b
d2ajff_
F:
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Neurolysin-like
(55)
Protein domain
:
Angiotensin converting enzyme 2, ACE2
(10)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d2ajfa_
A:
2b
d2ajfb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (268 KB)
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