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2AJC
Biol. Unit 3
Info
Asym.Unit (531 KB)
Biol.Unit 1 (264 KB)
Biol.Unit 2 (266 KB)
Biol.Unit 3 (520 KB)
Biol.Unit 4 (522 KB)
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(1)
Title
:
PORCINE DIPEPTIDYL PEPTIDASE IV (CD26) IN COMPLEX WITH 4-(2-AMINOETHYL)-BENZENE SULPHONYL FLUORIDE (AEBSF)
Authors
:
M. Engel, T. Hoffmann, S. Manhart, U. Heiser, S. Chambre, R. Huber, H. U. W. Bode
Date
:
01 Aug 05 (Deposition) - 28 Feb 06 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Serine Protease, Dipeptidyl Peptidase, Alpha/Beta-Hydrolase, Beta- Propeller, Oxyanion Hole, Substrate Channeling, Drug Design, Diabetes Mellitus, Flexibility, Hydrolase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Engel, T. Hoffmann, S. Manhart, U. Heiser, S. Chambre, R. Huber, H. U. Demuth, W. Bode
Rigidity And Flexibility Of Dipeptidyl Peptidase Iv: Crysta Structures Of And Docking Experiments With Dpiv.
J. Mol. Biol. V. 355 768 2006
[
close entry info
]
Hetero Components
(4, 43)
Info
All Hetero Components
1a: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESa)
1b: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESb)
1c: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESc)
1d: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESd)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AES
4
Ligand/Ion
4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
NAG
33
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:85 , SER A:86 , SER A:87
BINDING SITE FOR RESIDUE NAG A 767A
02
AC2
SOFTWARE
GLU A:73 , ASN A:74 , ASN A:75 , ASN A:92 , GLY A:521
BINDING SITE FOR RESIDUE NAG A 768A
03
AC3
SOFTWARE
ASN A:229 , THR A:231 , GLU A:232 , LYS A:267 , NAG A:770B
BINDING SITE FOR RESIDUE NAG A 769A
04
AC4
SOFTWARE
NAG A:769A
BINDING SITE FOR RESIDUE NAG A 770B
05
AC5
SOFTWARE
ASN A:279 , HOH A:1834 , TYR C:285
BINDING SITE FOR RESIDUE NAG A 771A
06
AC6
SOFTWARE
THR A:144 , ALA A:319 , ASN A:321 , SER A:349 , THR A:350 , HOH A:1717 , HOH A:1790
BINDING SITE FOR RESIDUE NAG A 772A
07
AC7
SOFTWARE
ARG A:597 , GLY A:599 , THR A:600 , MET A:638 , TYR A:682 , ASN A:685 , ARG A:691 , NAG A:774B , HOH A:1536 , HOH A:1731
BINDING SITE FOR RESIDUE NAG A 773A
08
AC8
SOFTWARE
ARG A:597 , TYR A:682 , NAG A:773A
BINDING SITE FOR RESIDUE NAG A 774B
09
AC9
SOFTWARE
ASN B:85 , SER B:86 , SER B:87
BINDING SITE FOR RESIDUE NAG B 767A
10
BC1
SOFTWARE
GLU B:73 , ASN B:74 , ASN B:75 , ASN B:92 , ILE B:348 , NAG B:769B , NAG B:773A , HOH B:1691
BINDING SITE FOR RESIDUE NAG B 768A
11
BC2
SOFTWARE
GLU B:73 , THR B:350 , NAG B:768A , BMA B:770C
BINDING SITE FOR RESIDUE NAG B 769B
12
BC3
SOFTWARE
NAG B:769B
BINDING SITE FOR RESIDUE BMA B 770C
13
BC4
SOFTWARE
ILE B:194 , ASN B:229 , THR B:231 , GLU B:232 , HOH B:1617 , HOH B:1784
BINDING SITE FOR RESIDUE NAG B 771A
14
BC5
SOFTWARE
ASN B:279 , HOH B:1826 , TYR D:285 , VAL D:288
BINDING SITE FOR RESIDUE NAG B 772A
15
BC6
SOFTWARE
ASN B:321 , SER B:349 , THR B:350 , NAG B:768A , HOH B:1565 , HOH B:1646 , HOH B:1680
BINDING SITE FOR RESIDUE NAG B 773A
16
BC7
SOFTWARE
ARG B:597 , GLY B:599 , THR B:600 , MET B:638 , ASN B:685 , ARG B:691 , NAG B:775B , HOH B:1638 , HOH B:1766
BINDING SITE FOR RESIDUE NAG B 774A
17
BC8
SOFTWARE
ARG B:597 , TYR B:682 , NAG B:774A
BINDING SITE FOR RESIDUE NAG B 775B
18
BC9
SOFTWARE
LEU C:78 , ASN C:85 , SER C:86 , SER C:87 , HOH C:1876
BINDING SITE FOR RESIDUE NAG C 767A
19
CC1
SOFTWARE
GLU C:73 , ASN C:74 , ASN C:75 , ASN C:92
BINDING SITE FOR RESIDUE NAG C 768A
20
CC2
SOFTWARE
ASN C:229 , THR C:231 , GLU C:232 , HOH C:1589 , HOH C:1768 , HOH C:1878
BINDING SITE FOR RESIDUE NAG C 769A
21
CC3
SOFTWARE
TYR A:285 , VAL A:288 , HOH A:1631 , ASN C:279 , HOH C:1813
BINDING SITE FOR RESIDUE NAG C 770A
22
CC4
SOFTWARE
ALA C:319 , ASN C:321 , SER C:349
BINDING SITE FOR RESIDUE NAG C 771A
23
CC5
SOFTWARE
ARG C:597 , GLY C:599 , THR C:600 , ASN C:685 , ARG C:691 , NAG C:773B , HOH C:1524 , HOH C:1708
BINDING SITE FOR RESIDUE NAG C 772A
24
CC6
SOFTWARE
ARG C:597 , TYR C:682 , NAG C:772A , HOH C:1708
BINDING SITE FOR RESIDUE NAG C 773B
25
CC7
SOFTWARE
ASN D:85 , SER D:87
BINDING SITE FOR RESIDUE NAG D 767A
26
CC8
SOFTWARE
GLU D:73 , ASN D:74 , ASN D:75 , ASN D:92 , ILE D:348 , THR D:350 , NAG D:769B
BINDING SITE FOR RESIDUE NAG D 768A
27
CC9
SOFTWARE
GLU D:73 , GLU D:378 , NAG D:768A , BMA D:770C
BINDING SITE FOR RESIDUE NAG D 769B
28
DC1
SOFTWARE
GLU D:378 , NAG D:769B
BINDING SITE FOR RESIDUE BMA D 770C
29
DC2
SOFTWARE
ILE D:194 , ASN D:229 , THR D:231 , GLU D:232 , NAG D:772B , HOH D:1761 , HOH D:1766 , HOH D:1819
BINDING SITE FOR RESIDUE NAG D 771A
30
DC3
SOFTWARE
NAG D:771A
BINDING SITE FOR RESIDUE NAG D 772B
31
DC4
SOFTWARE
ASN D:279 , HOH D:1620
BINDING SITE FOR RESIDUE NAG D 773A
32
DC5
SOFTWARE
ASN D:321 , SER D:349 , ARG D:596 , NAG D:775B , HOH D:1605
BINDING SITE FOR RESIDUE NAG D 774A
33
DC6
SOFTWARE
ARG D:596 , GLU D:677 , ASP D:678 , NAG D:774A , HOH D:1642
BINDING SITE FOR RESIDUE NAG D 775B
34
DC7
SOFTWARE
ARG D:597 , GLY D:599 , THR D:600 , MET D:638 , ASN D:685 , ARG D:691 , NAG D:777B , HOH D:1604 , HOH D:1811
BINDING SITE FOR RESIDUE NAG D 776A
35
DC8
SOFTWARE
GLU D:604 , TYR D:682 , NAG D:776A
BINDING SITE FOR RESIDUE NAG D 777B
36
DC9
SOFTWARE
ALA A:360 , GLU A:361 , HIS A:363 , ILE A:374 , GLY A:406 , ILE A:407 , HOH A:1512 , HOH A:1704 , HOH A:1713 , HOH A:1714 , HOH A:1807
BINDING SITE FOR RESIDUE SO4 A 1500
37
EC1
SOFTWARE
ALA B:360 , GLU B:361 , HIS B:363 , ILE B:374 , GLY B:406 , ILE B:407 , HOH B:1507 , HOH B:1529 , HOH B:1705 , HOH B:1736
BINDING SITE FOR RESIDUE SO4 B 1501
38
EC2
SOFTWARE
ALA C:360 , GLU C:361 , HIS C:363 , ILE C:374 , GLY C:406 , ILE C:407 , HOH C:1525 , HOH C:1594 , HOH C:1713 , HOH C:1717
BINDING SITE FOR RESIDUE SO4 C 1502
39
EC3
SOFTWARE
ALA D:360 , GLU D:361 , HIS D:363 , ILE D:374 , GLY D:406 , ILE D:407 , HOH D:1538 , HOH D:1723 , HOH D:1741
BINDING SITE FOR RESIDUE SO4 D 1503
40
EC4
SOFTWARE
GLU A:205 , GLU A:206 , PHE A:357 , TYR A:547 , TYR A:662 , HOH A:1684
BINDING SITE FOR RESIDUE AES A 801
41
EC5
SOFTWARE
GLU B:205 , GLU B:206 , PHE B:357 , TYR B:547 , TYR B:662
BINDING SITE FOR RESIDUE AES B 801
42
EC6
SOFTWARE
GLU C:205 , GLU C:206 , PHE C:357 , TYR C:547 , TYR C:662 , HOH C:1730
BINDING SITE FOR RESIDUE AES C 801
43
EC7
SOFTWARE
GLU D:205 , GLU D:206 , PHE D:357 , TYR D:547 , TYR D:662 , HOH D:1685
BINDING SITE FOR RESIDUE AES D 801
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PRO_ENDOPEP_SER (A:605-635,B:605-635,C:605-635,D:60...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
DPP4_PIG
605-635
4
A:605-635
B:605-635
C:605-635
D:605-635
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2ajca1 (A:39-508)
1b: SCOP_d2ajcb1 (B:39-508)
1c: SCOP_d2ajcc1 (C:39-508)
1d: SCOP_d2ajcd1 (D:39-508)
2a: SCOP_d2ajca2 (A:509-766)
2b: SCOP_d2ajcb2 (B:509-766)
2c: SCOP_d2ajcc2 (C:509-766)
2d: SCOP_d2ajcd2 (D:509-766)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
8-bladed beta-propeller
(135)
Superfamily
:
DPP6 N-terminal domain-like
(99)
Family
:
DPP6 N-terminal domain-like
(99)
Protein domain
:
Dipeptidyl peptidase IV/CD26, N-terminal domain
(88)
Pig (Sus scrofa) [TaxId: 9823]
(8)
1a
d2ajca1
A:39-508
1b
d2ajcb1
B:39-508
1c
d2ajcc1
C:39-508
1d
d2ajcd1
D:39-508
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
DPP6 catalytic domain-like
(63)
Protein domain
:
Dipeptidyl peptidase IV/CD26, C-terminal domain
(62)
Pig (Sus scrofa) [TaxId: 9823]
(8)
2a
d2ajca2
A:509-766
2b
d2ajcb2
B:509-766
2c
d2ajcc2
C:509-766
2d
d2ajcd2
D:509-766
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2ajcA02 (A:509-766)
1b: CATH_2ajcB02 (B:509-766)
1c: CATH_2ajcC02 (C:509-766)
1d: CATH_2ajcD02 (D:509-766)
2a: CATH_2ajcA01 (A:39-508)
2b: CATH_2ajcB01 (B:39-508)
2c: CATH_2ajcC01 (C:39-508)
2d: CATH_2ajcD01 (D:39-508)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pig (Sus scrofa)
(22)
1a
2ajcA02
A:509-766
1b
2ajcB02
B:509-766
1c
2ajcC02
C:509-766
1d
2ajcD02
D:509-766
Class
:
Mainly Beta
(13760)
Architecture
:
8 Propellor
(110)
Topology
:
Methanol Dehydrogenase; Chain A
(110)
Homologous Superfamily
:
[code=2.140.10.30, no name defined]
(74)
Pig (Sus scrofa)
(8)
2a
2ajcA01
A:39-508
2b
2ajcB01
B:39-508
2c
2ajcC01
C:39-508
2d
2ajcD01
D:39-508
[
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Pfam Domains
(0, 0)
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all PFAM domains
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