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2AJB
Biol. Unit 3
Info
Asym.Unit (520 KB)
Biol.Unit 1 (258 KB)
Biol.Unit 2 (261 KB)
Biol.Unit 3 (510 KB)
Biol.Unit 4 (509 KB)
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(1)
Title
:
PORCINE DIPEPTIDYL PEPTIDASE IV (CD26) IN COMPLEX WITH THE TRIPEPTIDE TERT-BUTYL-GLY-L-PRO-L-ILE (TBU-GPI)
Authors
:
M. Engel, T. Hoffmann, S. Manhart, U. Heiser, S. Chambre, R. Huber, H. U. W. Bode
Date
:
01 Aug 05 (Deposition) - 28 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Serine Protease, Dipeptidyl Peptidase, Alpha/Beta-Hydrolase, Beta- Propeller, Oxyanion Hole, Substrate Channeling, Drug Design, Diabetes Mellitus, Flexibility, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Engel, T. Hoffmann, S. Manhart, U. Heiser, S. Chambre, R. Huber, H. U. Demuth, W. Bode
Rigidity And Flexibility Of Dipeptidyl Peptidase Iv: Crysta Structures Of And Docking Experiments With Dpiv.
J. Mol. Biol. V. 355 768 2006
[
close entry info
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Hetero Components
(4, 22)
Info
All Hetero Components
1a: 3-METHYL-L-VALYL-L-PROLYL-L-ISOLEU... (0QGa)
1b: 3-METHYL-L-VALYL-L-PROLYL-L-ISOLEU... (0QGb)
1c: 3-METHYL-L-VALYL-L-PROLYL-L-ISOLEU... (0QGc)
1d: 3-METHYL-L-VALYL-L-PROLYL-L-ISOLEU... (0QGd)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0QG
2
Ligand/Ion
3-METHYL-L-VALYL-L-PROLYL-L-ISOLEUCINE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
NAG
17
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:125 , GLU A:205 , GLU A:206 , TYR A:547 , SER A:630 , TYR A:631 , VAL A:656 , TYR A:662 , TYR A:666 , ASN A:710 , HIS A:740
BINDING SITE FOR RESIDUE 0QG A 802
02
AC2
SOFTWARE
LEU A:78 , ASN A:85 , SER A:86 , SER A:87 , HOH A:1570
BINDING SITE FOR RESIDUE NAG A 767A
03
AC3
SOFTWARE
ASN A:75 , ASN A:92 , GLY A:521
BINDING SITE FOR RESIDUE NAG A 768A
04
AC4
SOFTWARE
ASN A:279 , HOH A:1573
BINDING SITE FOR RESIDUE NAG A 771A
05
AC5
SOFTWARE
ASN A:321 , ILE A:348 , SER A:349 , THR A:350 , ASP A:678 , HOH A:1523 , HOH A:1555
BINDING SITE FOR RESIDUE NAG A 772A
06
AC6
SOFTWARE
ALA A:360 , GLU A:361 , HIS A:363 , ILE A:374 , GLY A:406 , ILE A:407 , HOH A:1547 , HOH A:1550 , HOH A:1587 , HOH A:1629
BINDING SITE FOR RESIDUE SO4 A 1500
07
AC7
SOFTWARE
ARG B:125 , GLU B:205 , GLU B:206 , TYR B:547 , SER B:630 , TYR B:631 , TYR B:662 , TYR B:666 , ASN B:710 , VAL B:711
BINDING SITE FOR RESIDUE 0QG B 802
08
AC8
SOFTWARE
LEU B:78 , ASN B:85 , SER B:86 , SER B:87 , HOH B:1576 , HOH B:1677
BINDING SITE FOR RESIDUE NAG B 767A
09
AC9
SOFTWARE
ILE B:194 , ASN B:229 , GLU B:232 , HOH B:1510 , HOH B:1609
BINDING SITE FOR RESIDUE NAG B 771A
10
BC1
SOFTWARE
ASN B:279 , HOH B:1521 , TYR D:285 , VAL D:288 , LEU D:294
BINDING SITE FOR RESIDUE NAG B 772A
11
BC2
SOFTWARE
ASN B:321 , SER B:349 , THR B:350 , HOH B:1583 , HOH B:1639 , HOH B:1663 , HOH B:1670
BINDING SITE FOR RESIDUE NAG B 773A
12
BC3
SOFTWARE
ALA B:360 , GLU B:361 , HIS B:363 , GLY B:406 , ILE B:407 , HOH B:1503 , HOH B:1674
BINDING SITE FOR RESIDUE SO4 B 1501
13
BC4
SOFTWARE
ARG C:125 , GLU C:205 , GLU C:206 , TYR C:547 , SER C:630 , TYR C:631 , TYR C:662 , TYR C:666 , ASN C:710 , HIS C:740
BINDING SITE FOR RESIDUE 0QG C 802
14
BC5
SOFTWARE
LEU C:78 , ASN C:85 , SER C:87 , HOH C:1593
BINDING SITE FOR RESIDUE NAG C 767A
15
BC6
SOFTWARE
GLU C:73 , ASN C:74 , ASN C:75 , ASN C:92 , HOH C:1697
BINDING SITE FOR RESIDUE NAG C 768A
16
BC7
SOFTWARE
ILE C:194 , ASN C:229 , THR C:231 , GLU C:232 , HOH C:1528 , HOH C:1556 , HOH C:1646
BINDING SITE FOR RESIDUE NAG C 769A
17
BC8
SOFTWARE
VAL A:288 , ASN C:279 , HOH C:1599
BINDING SITE FOR RESIDUE NAG C 770A
18
BC9
SOFTWARE
ASN C:321 , SER C:349 , ARG C:596 , HOH C:1518 , HOH C:1653
BINDING SITE FOR RESIDUE NAG C 771A
19
CC1
SOFTWARE
ALA C:360 , GLU C:361 , HIS C:363 , GLY C:406 , ILE C:407 , HOH C:1523
BINDING SITE FOR RESIDUE SO4 C 1502
20
CC2
SOFTWARE
ARG D:125 , GLU D:205 , GLU D:206 , TYR D:547 , SER D:630 , TYR D:631 , TYR D:662 , TYR D:666 , ASN D:710 , VAL D:711 , HIS D:740
BINDING SITE FOR RESIDUE 0QG D 802
21
CC3
SOFTWARE
ASN D:85 , SER D:87
BINDING SITE FOR RESIDUE NAG D 767A
22
CC4
SOFTWARE
ASN D:279 , HOH D:1546 , HOH D:1670 , HOH D:1707
BINDING SITE FOR RESIDUE NAG D 773A
23
CC5
SOFTWARE
GLY D:599 , THR D:600 , MET D:638 , ASN D:685 , SER D:686 , ARG D:691 , NAG D:777B , HOH D:1514 , HOH D:1665
BINDING SITE FOR RESIDUE NAG D 776A
24
CC6
SOFTWARE
ARG D:597 , GLU D:604 , TYR D:682 , NAG D:776A , HOH D:1622 , HOH D:1685
BINDING SITE FOR RESIDUE NAG D 777B
25
CC7
SOFTWARE
ALA D:360 , GLU D:361 , HIS D:363 , GLY D:406 , ILE D:407 , HOH D:1550 , HOH D:1552 , HOH D:1600
BINDING SITE FOR RESIDUE SO4 D 1503
26
CC8
SOFTWARE
ILE A:194 , ASN A:229 , THR A:231 , GLU A:232 , HOH A:1571 , HOH A:1605 , HOH A:1656
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 229 RESIDUES 769 TO 770
27
CC9
SOFTWARE
ARG A:597 , GLY A:599 , THR A:600 , MET A:638 , TYR A:682 , ASN A:685 , SER A:686 , ARG A:691 , HOH A:1567 , HOH A:1687
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 685 RESIDUES 773 TO 774
28
DC1
SOFTWARE
GLU B:73 , ASN B:74 , ASN B:75 , ASN B:92 , THR B:350 , HOH B:1703 , HOH B:1711 , HOH B:1715
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 92 RESIDUES 768 TO 770
29
DC2
SOFTWARE
ARG B:597 , THR B:600 , TYR B:682 , ASN B:685 , SER B:686 , ARG B:691 , HOH B:1706
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 685 RESIDUES 774 TO 775
30
DC3
SOFTWARE
ARG C:597 , GLY C:599 , THR C:600 , GLU C:604 , TYR C:682 , ASN C:685 , ARG C:691 , HOH C:1573 , HOH C:1610 , HOH C:1621 , HOH C:1633
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 685 RESIDUES 772 TO 773
31
DC4
SOFTWARE
GLU D:73 , ASN D:74 , ASN D:75 , ASN D:92 , ILE D:348 , GLU D:378 , HOH D:1602 , HOH D:1709
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 92 RESIDUES 768 TO 770
32
DC5
SOFTWARE
ASN D:229 , THR D:231 , GLU D:232 , HOH D:1710
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 229 RESIDUES 771 TO 772
33
DC6
SOFTWARE
ASN D:321 , SER D:349 , ARG D:596 , GLU D:677 , HOH D:1638 , HOH D:1696
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 321 RESIDUES 774 TO 775
34
DC7
SOFTWARE
ARG D:597 , GLY D:599 , THR D:600 , GLU D:604 , MET D:638 , TYR D:682 , ASN D:685 , SER D:686 , ARG D:691 , HOH D:1514 , HOH D:1622 , HOH D:1665 , HOH D:1685
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 685 RESIDUES 776 TO 777
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PRO_ENDOPEP_SER (A:605-635,B:605-635,C:605-635,D:60...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
DPP4_PIG
605-635
4
A:605-635
B:605-635
C:605-635
D:605-635
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2ajba1 (A:39-508)
1b: SCOP_d2ajbb1 (B:39-508)
1c: SCOP_d2ajbc1 (C:39-508)
1d: SCOP_d2ajbd1 (D:39-508)
2a: SCOP_d2ajba2 (A:509-766)
2b: SCOP_d2ajbb2 (B:509-766)
2c: SCOP_d2ajbc2 (C:509-766)
2d: SCOP_d2ajbd2 (D:509-766)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
8-bladed beta-propeller
(135)
Superfamily
:
DPP6 N-terminal domain-like
(99)
Family
:
DPP6 N-terminal domain-like
(99)
Protein domain
:
Dipeptidyl peptidase IV/CD26, N-terminal domain
(88)
Pig (Sus scrofa) [TaxId: 9823]
(8)
1a
d2ajba1
A:39-508
1b
d2ajbb1
B:39-508
1c
d2ajbc1
C:39-508
1d
d2ajbd1
D:39-508
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
DPP6 catalytic domain-like
(63)
Protein domain
:
Dipeptidyl peptidase IV/CD26, C-terminal domain
(62)
Pig (Sus scrofa) [TaxId: 9823]
(8)
2a
d2ajba2
A:509-766
2b
d2ajbb2
B:509-766
2c
d2ajbc2
C:509-766
2d
d2ajbd2
D:509-766
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2ajbA02 (A:509-766)
1b: CATH_2ajbB02 (B:509-766)
1c: CATH_2ajbC02 (C:509-766)
1d: CATH_2ajbD02 (D:509-766)
2a: CATH_2ajbA01 (A:39-508)
2b: CATH_2ajbB01 (B:39-508)
2c: CATH_2ajbC01 (C:39-508)
2d: CATH_2ajbD01 (D:39-508)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pig (Sus scrofa)
(22)
1a
2ajbA02
A:509-766
1b
2ajbB02
B:509-766
1c
2ajbC02
C:509-766
1d
2ajbD02
D:509-766
Class
:
Mainly Beta
(13760)
Architecture
:
8 Propellor
(110)
Topology
:
Methanol Dehydrogenase; Chain A
(110)
Homologous Superfamily
:
[code=2.140.10.30, no name defined]
(74)
Pig (Sus scrofa)
(8)
2a
2ajbA01
A:39-508
2b
2ajbB01
B:39-508
2c
2ajbC01
C:39-508
2d
2ajbD01
D:39-508
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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