PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2AJ7
Biol. Unit 2
Info
Asym.Unit (70 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (180 KB)
Biol.Unit 3 (180 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE CONTRACTILE PROTEIN (BH3618) FROM BACILLUS HALODURANS AT 1.67 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
01 Aug 05 (Deposition) - 15 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (3x)
Biol. Unit 3: A,B (3x)
Keywords
:
Bh3618-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (10176242) From Bacillus Halodurans At 1. 67 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(3, 69)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
3a: POTASSIUM ION (Ka)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
5a: NICKEL (II) ION (NIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
36
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
21
Ligand/Ion
FORMIC ACID
3
K
-1
Ligand/Ion
POTASSIUM ION
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
5
NI
-1
Ligand/Ion
NICKEL (II) ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:-2 , HIS B:0
BINDING SITE FOR RESIDUE NI B 152
02
AC2
SOFTWARE
ASP B:31 , HOH B:179
BINDING SITE FOR RESIDUE K B 153
03
AC3
SOFTWARE
ASN A:63 , ALA A:92 , ILE A:93 , LYS A:148 , HOH A:250
BINDING SITE FOR RESIDUE EDO A 152
04
AC4
SOFTWARE
PHE A:68 , TYR A:71 , HOH A:226 , HOH A:309
BINDING SITE FOR RESIDUE EDO A 153
05
AC5
SOFTWARE
ASP A:31 , GLU A:32 , LYS A:53 , HOH A:184
BINDING SITE FOR RESIDUE EDO A 154
06
AC6
SOFTWARE
ASN A:109 , ALA A:112 , GLN A:125 , ARG A:135 , HOH A:164 , HOH A:231 , ALA B:28 , GLU B:30
BINDING SITE FOR RESIDUE EDO A 155
07
AC7
SOFTWARE
HIS B:-1 , HIS B:0 , MSE B:1 , GLU B:16 , ASP B:17 , HOH B:191
BINDING SITE FOR RESIDUE EDO B 154
08
AC8
SOFTWARE
GLY B:43 , THR B:44 , FMT B:163 , HOH B:204
BINDING SITE FOR RESIDUE EDO B 155
09
AC9
SOFTWARE
HIS A:-4 , GLU B:88 , VAL B:91 , FMT B:162
BINDING SITE FOR RESIDUE EDO B 156
10
BC1
SOFTWARE
ASN B:63 , VAL B:91 , ALA B:92 , ILE B:93 , PHE B:94 , HOH B:322
BINDING SITE FOR RESIDUE EDO B 157
11
BC2
SOFTWARE
GLU B:13 , ARG B:18 , EDO B:160
BINDING SITE FOR RESIDUE EDO B 158
12
BC3
SOFTWARE
ALA A:28 , GLU A:30 , LEU B:96 , ASN B:109 , ALA B:112 , GLN B:125 , ARG B:135 , HOH B:175 , HOH B:208 , HOH B:231
BINDING SITE FOR RESIDUE EDO B 159
13
BC4
SOFTWARE
SER A:9 , SER B:9 , LEU B:12 , LEU B:38 , PRO B:39 , EDO B:158 , EDO B:161
BINDING SITE FOR RESIDUE EDO B 160
14
BC5
SOFTWARE
PHE A:40 , THR B:6 , LYS B:7 , TYR B:8 , SER B:9 , LEU B:38 , PRO B:39 , THR B:48 , GLN B:50 , ALA B:58 , EDO B:160 , HOH B:332
BINDING SITE FOR RESIDUE EDO B 161
15
BC6
SOFTWARE
THR A:131 , ALA A:132 , TYR A:133 , HOH A:295
BINDING SITE FOR RESIDUE FMT A 156
16
BC7
SOFTWARE
GLY A:43 , THR A:44 , PRO A:45 , SER A:66 , FMT A:158 , HOH A:199 , PHE B:103 , HOH B:271
BINDING SITE FOR RESIDUE FMT A 157
17
BC8
SOFTWARE
ALA A:42 , GLY A:43 , THR A:44 , FMT A:157 , HOH A:209
BINDING SITE FOR RESIDUE FMT A 158
18
BC9
SOFTWARE
ALA A:58 , PHE A:59 , FMT A:160 , HOH A:203 , HOH A:296
BINDING SITE FOR RESIDUE FMT A 159
19
CC1
SOFTWARE
PHE A:59 , ILE A:60 , LEU A:97 , FMT A:159
BINDING SITE FOR RESIDUE FMT A 160
20
CC2
SOFTWARE
HIS A:-2 , MSE A:1 , THR B:86 , ASN B:87 , EDO B:156
BINDING SITE FOR RESIDUE FMT B 162
21
CC3
SOFTWARE
PHE A:103 , GLY B:43 , THR B:44 , PRO B:45 , SER B:66 , EDO B:155 , HOH B:199 , HOH B:250
BINDING SITE FOR RESIDUE FMT B 163
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2aj7a1 (A:1-148)
1b: SCOP_d2aj7b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
BH3618-like
(1)
Superfamily
:
BH3618-like
(1)
Family
:
BH3618-like
(1)
Protein domain
:
Hypothetical protein BH3618
(1)
Bacillus halodurans [TaxId: 86665]
(1)
1a
d2aj7a1
A:1-148
1b
d2aj7b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2aj7A00 (A:-8-148)
1b: CATH_2aj7B00 (B:-2-146)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
BH3618-like
(1)
Homologous Superfamily
:
BH3618-like
(1)
Bacillus halodurans. Organism_taxid: 86665. Strain: a-59.
(1)
1a
2aj7A00
A:-8-148
1b
2aj7B00
B:-2-146
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (70 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (180 KB)
Header - Biol.Unit 2
Biol.Unit 3 (180 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2AJ7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
