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2AHS
Biol. Unit 2
Info
Asym.Unit (111 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN TYROSINE RECEPTOR PHOSPHATASE BETA
Authors
:
E. Ugochukwu, J. Eswaran, A. Barr, O. Gileadi, F. Sobott, N. Burgess, L. J. Bray, F. Von Delft, J. Debreczeni, G. Bunkoczi, A. Turnbull, S. Das J. Weigelt, A. Edwards, C. Arrowsmith, M. Sundstrom, S. Knapp, Struct Genomics Consortium (Sgc)
Date
:
28 Jul 05 (Deposition) - 09 Aug 05 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tyrosine Receptor Phosphatase, Beta, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
3a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:1726 , CYS B:1754
BINDING SITE FOR RESIDUE CL B 801
02
AC3
SOFTWARE
GLU B:1840
BINDING SITE FOR RESIDUE CL B 804
03
AC4
SOFTWARE
SER B:1834 , SER B:1836 , ILE B:1843
BINDING SITE FOR RESIDUE CL B 805
04
AC6
SOFTWARE
HOH A:71 , ARG B:1732 , TYR B:1733
BINDING SITE FOR RESIDUE CL B 808
05
AC7
SOFTWARE
GLN B:1717 , LEU B:1941
BINDING SITE FOR RESIDUE CL B 809
06
AC8
SOFTWARE
LYS B:1788
BINDING SITE FOR RESIDUE CL B 810
07
BC4
SOFTWARE
PRO B:1839 , GLU B:1840 , TRP B:1841
BINDING SITE FOR RESIDUE EDO B 728
08
BC6
SOFTWARE
CYS B:1719 , ASN B:1735 , ILE B:1736 , LEU B:1737 , VAL B:1944
BINDING SITE FOR RESIDUE EDO B 734
09
BC7
SOFTWARE
GLY B:1765 , PHE B:1768 , ARG B:1769
BINDING SITE FOR RESIDUE EDO B 737
10
BC8
SOFTWARE
HOH A:637 , HOH B:213 , ALA B:1741 , ARG B:1770
BINDING SITE FOR RESIDUE EDO B 741
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_057139 (G1934A, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_057139
G
1934
A
PTPRB_HUMAN
Polymorphism
17226367
B
G
1934
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (B:1703-1963)
2: TYR_PHOSPHATASE_2 (B:1878-1954)
3: TYR_PHOSPHATASE_1 (B:1902-1912)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTPRB_HUMAN
1703-1963
1
-
B:1703-1963
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTPRB_HUMAN
1878-1954
1
-
B:1878-1954
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTPRB_HUMAN
1902-1912
1
-
B:1902-1912
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ahsa_ (A:)
1b: SCOP_d2ahsb_ (B:)
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Classes
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2ahsa_
A:
1b
d2ahsb_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ahsA00 (A:1687-1967)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2ahsA00
A:1687-1967
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
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