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2AHS
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN TYROSINE RECEPTOR PHOSPHATASE BETA
Authors
:
E. Ugochukwu, J. Eswaran, A. Barr, O. Gileadi, F. Sobott, N. Burgess, L. J. Bray, F. Von Delft, J. Debreczeni, G. Bunkoczi, A. Turnbull, S. Das J. Weigelt, A. Edwards, C. Arrowsmith, M. Sundstrom, S. Knapp, Struct Genomics Consortium (Sgc)
Date
:
28 Jul 05 (Deposition) - 09 Aug 05 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tyrosine Receptor Phosphatase, Beta, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
3a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
9
Ligand/Ion
CHLORIDE ION
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:1726 , CYS B:1754
BINDING SITE FOR RESIDUE CL B 801
02
AC2
SOFTWARE
ARG A:1770
BINDING SITE FOR RESIDUE CL A 803
03
AC3
SOFTWARE
GLU B:1840
BINDING SITE FOR RESIDUE CL B 804
04
AC4
SOFTWARE
SER B:1834 , SER B:1836 , ILE B:1843
BINDING SITE FOR RESIDUE CL B 805
05
AC5
SOFTWARE
HOH A:201 , ASP A:1720 , LEU A:1723
BINDING SITE FOR RESIDUE CL A 807
06
AC6
SOFTWARE
HOH A:71 , ARG B:1732 , TYR B:1733
BINDING SITE FOR RESIDUE CL B 808
07
AC7
SOFTWARE
GLN B:1717 , LEU B:1941
BINDING SITE FOR RESIDUE CL B 809
08
AC8
SOFTWARE
LYS B:1788
BINDING SITE FOR RESIDUE CL B 810
09
AC9
SOFTWARE
ALA A:1741 , ARG A:1743
BINDING SITE FOR RESIDUE NA A 811
10
BC1
SOFTWARE
HOH A:344 , HOH A:650 , CYS A:1719 , ASN A:1735 , ILE A:1736 , LEU A:1737 , VAL A:1944
BINDING SITE FOR RESIDUE EDO A 722
11
BC2
SOFTWARE
TYR A:1733 , ASN A:1735 , ILE A:1736 , GLN A:1948
BINDING SITE FOR RESIDUE EDO A 725
12
BC3
SOFTWARE
HOH A:518 , HOH A:595 , VAL A:1873 , PRO A:1874 , GLU A:1875 , TYR A:1955 , GLN A:1958
BINDING SITE FOR RESIDUE EDO A 726
13
BC4
SOFTWARE
PRO B:1839 , GLU B:1840 , TRP B:1841
BINDING SITE FOR RESIDUE EDO B 728
14
BC5
SOFTWARE
ALA A:1856 , ARG A:1858
BINDING SITE FOR RESIDUE EDO A 729
15
BC6
SOFTWARE
CYS B:1719 , ASN B:1735 , ILE B:1736 , LEU B:1737 , VAL B:1944
BINDING SITE FOR RESIDUE EDO B 734
16
BC7
SOFTWARE
GLY B:1765 , PHE B:1768 , ARG B:1769
BINDING SITE FOR RESIDUE EDO B 737
17
BC8
SOFTWARE
HOH A:637 , HOH B:213 , ALA B:1741 , ARG B:1770
BINDING SITE FOR RESIDUE EDO B 741
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_057139 (G1934A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_057139
G
1934
A
PTPRB_HUMAN
Polymorphism
17226367
A/B
G
1934
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:1703-1963,B:1703-1963)
2: TYR_PHOSPHATASE_2 (A:1878-1954,B:1878-1954)
3: TYR_PHOSPHATASE_1 (A:1902-1912,B:1902-1912)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTPRB_HUMAN
1703-1963
2
A:1703-1963
B:1703-1963
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTPRB_HUMAN
1878-1954
2
A:1878-1954
B:1878-1954
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTPRB_HUMAN
1902-1912
2
A:1902-1912
B:1902-1912
[
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]
Exons
(8, 16)
Info
All Exons
Exon 1.27 (A:1687-1708 | B:1693-1708)
Exon 1.28 (A:1709-1739 | B:1709-1739)
Exon 1.29 (A:1739-1764 | B:1739-1764)
Exon 1.30 (A:1765-1809 | B:1765-1809)
Exon 1.31 (A:1810-1850 | B:1810-1850)
Exon 1.32 (A:1851-1905 | B:1851-1905)
Exon 1.33 (A:1905-1950 | B:1905-1950 (gaps))
Exon 1.34 (A:1951-1967 | B:1951-1966)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26/1.27
2: Boundary 1.27/1.28
3: Boundary 1.28/1.29
4: Boundary 1.29/1.30
5: Boundary 1.30/1.31
6: Boundary 1.31/1.32
7: Boundary 1.32/1.33
8: Boundary 1.33/1.34
9: Boundary 1.34/1.35
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000261266
4a
ENSE00000871974
chr12:
71003624-71003541
84
PTPRB_HUMAN
1-18
18
0
-
-
1.5
ENST00000261266
5
ENSE00000871972
chr12:
71003119-71002849
271
PTPRB_HUMAN
19-109
91
0
-
-
1.6
ENST00000261266
6
ENSE00001176717
chr12:
70990107-70989829
279
PTPRB_HUMAN
109-202
94
0
-
-
1.7
ENST00000261266
7
ENSE00001176709
chr12:
70988504-70988247
258
PTPRB_HUMAN
202-288
87
0
-
-
1.8
ENST00000261266
8
ENSE00001176702
chr12:
70986325-70986062
264
PTPRB_HUMAN
288-376
89
0
-
-
1.9
ENST00000261266
9
ENSE00001176692
chr12:
70984013-70983744
270
PTPRB_HUMAN
376-466
91
0
-
-
1.10
ENST00000261266
10
ENSE00001176680
chr12:
70981047-70980787
261
PTPRB_HUMAN
466-553
88
0
-
-
1.11
ENST00000261266
11
ENSE00001176673
chr12:
70975082-70974816
267
PTPRB_HUMAN
553-642
90
0
-
-
1.12
ENST00000261266
12
ENSE00001176665
chr12:
70970425-70970162
264
PTPRB_HUMAN
642-730
89
0
-
-
1.13
ENST00000261266
13
ENSE00001176657
chr12:
70965867-70965604
264
PTPRB_HUMAN
730-818
89
0
-
-
1.14
ENST00000261266
14
ENSE00001176650
chr12:
70965069-70964806
264
PTPRB_HUMAN
818-906
89
0
-
-
1.15
ENST00000261266
15
ENSE00001176641
chr12:
70963718-70963455
264
PTPRB_HUMAN
906-994
89
0
-
-
1.16
ENST00000261266
16
ENSE00001176634
chr12:
70960484-70960215
270
PTPRB_HUMAN
994-1084
91
0
-
-
1.17
ENST00000261266
17
ENSE00001176624
chr12:
70956887-70956624
264
PTPRB_HUMAN
1084-1172
89
0
-
-
1.18
ENST00000261266
18
ENSE00001176613
chr12:
70954714-70954451
264
PTPRB_HUMAN
1172-1260
89
0
-
-
1.19
ENST00000261266
19
ENSE00001601030
chr12:
70953404-70953123
282
PTPRB_HUMAN
1260-1354
95
0
-
-
1.20
ENST00000261266
20
ENSE00001754193
chr12:
70949928-70949650
279
PTPRB_HUMAN
1354-1447
94
0
-
-
1.21a
ENST00000261266
21a
ENSE00001778550
chr12:
70949089-70948940
150
PTPRB_HUMAN
1447-1497
51
0
-
-
1.22a
ENST00000261266
22a
ENSE00001618774
chr12:
70946800-70946557
244
PTPRB_HUMAN
1497-1578
82
0
-
-
1.23
ENST00000261266
23
ENSE00001708455
chr12:
70938443-70938337
107
PTPRB_HUMAN
1578-1614
37
0
-
-
1.24
ENST00000261266
24
ENSE00001782264
chr12:
70934737-70934638
100
PTPRB_HUMAN
1614-1647
34
0
-
-
1.25
ENST00000261266
25
ENSE00001629388
chr12:
70933802-70933719
84
PTPRB_HUMAN
1647-1675
29
0
-
-
1.26
ENST00000261266
26
ENSE00001617922
chr12:
70933624-70933607
18
PTPRB_HUMAN
1675-1681
7
0
-
-
1.27
ENST00000261266
27
ENSE00001593093
chr12:
70933486-70933405
82
PTPRB_HUMAN
1681-1708
28
2
A:1687-1708
B:1693-1708
22
16
1.28
ENST00000261266
28
ENSE00001711408
chr12:
70932794-70932704
91
PTPRB_HUMAN
1709-1739
31
2
A:1709-1739
B:1709-1739
31
31
1.29
ENST00000261266
29
ENSE00001747568
chr12:
70932011-70931935
77
PTPRB_HUMAN
1739-1764
26
2
A:1739-1764
B:1739-1764
26
26
1.30
ENST00000261266
30
ENSE00001708497
chr12:
70929939-70929805
135
PTPRB_HUMAN
1765-1809
45
2
A:1765-1809
B:1765-1809
45
45
1.31
ENST00000261266
31
ENSE00001790021
chr12:
70928735-70928613
123
PTPRB_HUMAN
1810-1850
41
2
A:1810-1850
B:1810-1850
41
41
1.32
ENST00000261266
32
ENSE00001778655
chr12:
70928431-70928268
164
PTPRB_HUMAN
1851-1905
55
2
A:1851-1905
B:1851-1905
55
55
1.33
ENST00000261266
33
ENSE00001680441
chr12:
70925950-70925815
136
PTPRB_HUMAN
1905-1950
46
2
A:1905-1950
B:1905-1950 (gaps)
46
46
1.34
ENST00000261266
34
ENSE00001754760
chr12:
70918371-70918251
121
PTPRB_HUMAN
1951-1991
41
2
A:1951-1967
B:1951-1966
17
16
1.35
ENST00000261266
35
ENSE00001244013
chr12:
70915291-70910630
4662
PTPRB_HUMAN
1991-1997
7
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ahsa_ (A:)
1b: SCOP_d2ahsb_ (B:)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2ahsa_
A:
1b
d2ahsb_
B:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ahsA00 (A:1687-1967)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2ahsA00
A:1687-1967
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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