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Getting 'Exon' information from database.
2AG9
Asym. Unit
Info
Asym.Unit (64 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE Y137S MUTANT OF GM2-ACTIVATOR PROTEIN
Authors
:
C. S. Wright, L. Z. Mi, S. Lee, F. Rastinejad
Date
:
26 Jul 05 (Deposition) - 25 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Conformational Changes In Mobile Loop (W131 Loop), Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Wright, L. Z. Mi, S. Lee, F. Rastinejad
Crystal Structure Analysis Of Phosphatidylcholine-Gm2-Activator Product Complexes: Evidence For Hydrolase Activity.
Biochemistry V. 44 13510 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
1b: ISOPROPYL ALCOHOL (IPAb)
1c: ISOPROPYL ALCOHOL (IPAc)
1d: ISOPROPYL ALCOHOL (IPAd)
1e: ISOPROPYL ALCOHOL (IPAe)
1f: ISOPROPYL ALCOHOL (IPAf)
1g: ISOPROPYL ALCOHOL (IPAg)
1h: ISOPROPYL ALCOHOL (IPAh)
1i: ISOPROPYL ALCOHOL (IPAi)
1j: ISOPROPYL ALCOHOL (IPAj)
1k: ISOPROPYL ALCOHOL (IPAk)
1l: ISOPROPYL ALCOHOL (IPAl)
1m: ISOPROPYL ALCOHOL (IPAm)
1n: ISOPROPYL ALCOHOL (IPAn)
2a: MYRISTIC ACID (MYRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IPA
14
Ligand/Ion
ISOPROPYL ALCOHOL
2
MYR
1
Ligand/Ion
MYRISTIC ACID
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU B:98 , LEU B:118 , HOH B:3087
BINDING SITE FOR RESIDUE MYR B 3045
2
AC2
SOFTWARE
GLU B:113
BINDING SITE FOR RESIDUE IPA B 1504
3
AC3
SOFTWARE
PHE A:82
BINDING SITE FOR RESIDUE IPA A 1505
4
AC4
SOFTWARE
GLY B:41 , SER B:42
BINDING SITE FOR RESIDUE IPA B 1506
5
AC5
SOFTWARE
LEU B:100 , PRO B:106
BINDING SITE FOR RESIDUE IPA B 1511
6
AC6
SOFTWARE
HOH A:1611
BINDING SITE FOR RESIDUE IPA A 1513
7
AC7
SOFTWARE
HOH A:1657
BINDING SITE FOR RESIDUE IPA A 1514
8
AC8
SOFTWARE
PRO A:97 , GLU A:98 , IPA A:1517
BINDING SITE FOR RESIDUE IPA A 1515
9
AC9
SOFTWARE
PRO A:97 , IPA A:1515
BINDING SITE FOR RESIDUE IPA A 1517
[
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036892 (V30V, chain A/B, )
2: VAR_036893 (V40V, chain A/B, )
3: VAR_006947 (C109R, chain A/B, )
4: VAR_011698 (R140P, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036892
I
59
V
SAP3_HUMAN
Polymorphism
153477
A/B
V
30
V
2
UniProt
VAR_036893
M
69
V
SAP3_HUMAN
Polymorphism
153478
A/B
V
40
V
3
UniProt
VAR_006947
C
138
R
SAP3_HUMAN
Disease (GM2GAB)
---
A/B
C
109
R
4
UniProt
VAR_011698
R
169
P
SAP3_HUMAN
Disease (GM2GAB)
---
A/B
R
140
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.4a (A:1-52 | B:1-52)
Exon 1.5b (A:53-113 | B:53-113)
Exon 1.6 (A:114-164 | B:114-164)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.5b
3: Boundary 1.5b/1.6
4: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000357164
3
ENSE00001085753
chr5:
150632453-150632858
406
SAP3_HUMAN
1-27
27
0
-
-
1.4a
ENST00000357164
4a
ENSE00001328369
chr5:
150639316-150639477
162
SAP3_HUMAN
28-81
54
2
A:1-52
B:1-52
52
52
1.5b
ENST00000357164
5b
ENSE00001085757
chr5:
150646292-150646474
183
SAP3_HUMAN
82-142
61
2
A:53-113
B:53-113
61
61
1.6
ENST00000357164
6
ENSE00001427604
chr5:
150646857-150650001
3145
SAP3_HUMAN
143-193
51
2
A:114-164
B:114-164
51
51
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ag9a_ (A:)
1b: SCOP_d2ag9b_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Ganglioside M2 (gm2) activator
(9)
Superfamily
:
Ganglioside M2 (gm2) activator
(9)
Family
:
Ganglioside M2 (gm2) activator
(9)
Protein domain
:
Ganglioside M2 (gm2) activator
(9)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2ag9a_
A:
1b
d2ag9b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ag9A00 (A:1-164)
1b: CATH_2ag9B00 (B:1-164)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Ganglioside M2 Activator Protein; Chain: A,
(9)
Homologous Superfamily
:
[code=2.70.220.10, no name defined]
(9)
Human (Homo sapiens)
(8)
1a
2ag9A00
A:1-164
1b
2ag9B00
B:1-164
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Show PDB file:
Asym.Unit (64 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
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