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Getting 'Exon' information from database.
2AFZ
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (349 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTAMINYL CYCLASE IN COMPLEX WITH 1-VINYLIMIDAZOLE
Authors
:
K. F. Huang, Y. L. Liu, W. J. Cheng, T. P. Ko, A. H. J. Wang
Date
:
26 Jul 05 (Deposition) - 23 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.68
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (3x)
Keywords
:
Alpha-Beta Protein, Metalloprotein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. F. Huang, Y. L. Liu, W. J. Cheng, T. P. Ko, A. H. Wang
Crystal Structures Of Human Glutaminyl Cyclase, An Enzyme Responsible For Protein N-Terminal Pyroglutamate Formation
Proc. Natl. Acad. Sci. Usa V. 102 13117 2005
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 1-VINYLIMIDAZOLE (NVIa)
1b: 1-VINYLIMIDAZOLE (NVIb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NVI
2
Ligand/Ion
1-VINYLIMIDAZOLE
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:159 , GLU A:202 , HIS A:330 , NVI A:381
BINDING SITE FOR RESIDUE ZN A 391
2
AC2
SOFTWARE
ASP B:159 , GLU B:202 , HIS B:330 , NVI B:1381
BINDING SITE FOR RESIDUE ZN B 392
3
AC3
SOFTWARE
LYS A:144 , HIS A:206 , TRP A:207 , ASN A:263 , TRP A:329 , HIS A:330 , HOH A:592 , HOH A:955
BINDING SITE FOR RESIDUE SO4 A 395
4
AC4
SOFTWARE
LYS B:144 , LEU B:205 , HIS B:206 , TRP B:207 , HOH B:628 , HOH B:629 , HOH B:781
BINDING SITE FOR RESIDUE SO4 B 396
5
AC5
SOFTWARE
ASP A:159 , GLU A:201 , GLU A:202 , ASP A:248 , ILE A:303 , GLN A:304 , ASP A:305 , ILE A:321 , TRP A:329 , HIS A:330 , ZN A:391
BINDING SITE FOR RESIDUE NVI A 381
6
AC6
SOFTWARE
ASP B:159 , GLU B:201 , GLU B:202 , ASP B:248 , ILE B:303 , GLN B:304 , ASP B:305 , ILE B:321 , TRP B:329 , HIS B:330 , ZN B:392
BINDING SITE FOR RESIDUE NVI B 1381
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_053956 (R54W, chain A/B, )
2: VAR_005569 (Q71R, chain A/B, )
3: VAR_053957 (H360P, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_053956
R
54
W
QPCT_HUMAN
Polymorphism
2255991
A/B
R
54
W
2
UniProt
VAR_005569
Q
71
R
QPCT_HUMAN
Polymorphism
---
A/B
Q
71
R
3
UniProt
VAR_053957
H
360
P
QPCT_HUMAN
Polymorphism
4670696
A/B
H
360
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(7, 14)
Info
All Exons
Exon 1.1a (A:33-40 | B:33-40)
Exon 1.2 (A:41-89 | B:41-89)
Exon 1.4a (A:90-182 | B:90-182)
Exon 1.5b (A:189-241 | B:189-241)
Exon 1.7b (A:242-275 | B:242-275)
Exon 1.8 (A:275-314 | B:275-314)
Exon 1.9d (A:314-361 | B:314-361)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4a
4: Boundary 1.4a/1.5b
5: Boundary 1.5b/1.7b
6: Boundary 1.7b/1.8
7: Boundary 1.8/1.9d
8: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000338415
1a
ENSE00001279566
chr2:
37571717-37571994
278
QPCT_HUMAN
1-40
40
2
A:33-40
B:33-40
8
8
1.2
ENST00000338415
2
ENSE00001279532
chr2:
37579932-37580078
147
QPCT_HUMAN
41-89
49
2
A:41-89
B:41-89
49
49
1.4a
ENST00000338415
4a
ENSE00001279523
chr2:
37586723-37587001
279
QPCT_HUMAN
90-182
93
2
A:90-182
B:90-182
93
93
1.5b
ENST00000338415
5b
ENSE00000747404
chr2:
37594375-37594551
177
QPCT_HUMAN
183-241
59
2
A:189-241
B:189-241
53
53
1.7b
ENST00000338415
7b
ENSE00000747405
chr2:
37596828-37596927
100
QPCT_HUMAN
242-275
34
2
A:242-275
B:242-275
34
34
1.8
ENST00000338415
8
ENSE00001279502
chr2:
37599499-37599615
117
QPCT_HUMAN
275-314
40
2
A:275-314
B:275-314
40
40
1.9d
ENST00000338415
9d
ENSE00001379586
chr2:
37599825-37600465
641
QPCT_HUMAN
314-361
48
2
A:314-361
B:314-361
48
48
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2afza_ (A:)
1b: SCOP_d2afzb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Glutaminyl-peptide cyclotransferase-like
(22)
Protein domain
:
Glutaminyl-peptide cyclotransferase, QPCT
(22)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2afza_
A:
1b
d2afzb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (349 KB)
Header - Biol.Unit 3
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