PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2AFU
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (342 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTAMINYL CYCLASE IN COMPLEX WITH GLUTAMINE T-BUTYL ESTER
Authors
:
K. F. Huang, Y. L. Liu, W. J. Cheng, T. P. Ko, A. H. J. Wang
Date
:
26 Jul 05 (Deposition) - 23 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (3x)
Keywords
:
Alpha-Beta Protein, Metalloprotein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. F. Huang, Y. L. Liu, W. J. Cheng, T. P. Ko, A. H. Wang
Crystal Structures Of Human Glutaminyl Cyclase, An Enzyme Responsible For Protein N-Terminal Pyroglutamate Formation
Proc. Natl. Acad. Sci. Usa V. 102 13117 2005
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: TERT-BUTYL D-ALPHA-GLUTAMINATE (BGTa)
1b: TERT-BUTYL D-ALPHA-GLUTAMINATE (BGTb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGT
2
Ligand/Ion
TERT-BUTYL D-ALPHA-GLUTAMINATE
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:159 , GLU A:202 , HIS A:330 , BGT A:381
BINDING SITE FOR RESIDUE ZN A 391
2
AC2
SOFTWARE
ASP B:159 , GLU B:202 , HIS B:330 , HOH B:401
BINDING SITE FOR RESIDUE ZN B 392
3
AC3
SOFTWARE
ASP A:159 , GLN A:201 , GLU A:202 , TRP A:207 , ASP A:248 , ILE A:303 , GLN A:304 , PHE A:325 , TRP A:329 , HIS A:330 , ZN A:391 , HOH A:871
BINDING SITE FOR RESIDUE BGT A 381
4
AC4
SOFTWARE
ASP B:248 , ASN B:263 , GLN B:304 , PHE B:325 , TRP B:329 , HOH B:401
BINDING SITE FOR RESIDUE BGT B 382
[
close Site info
]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_053956 (R54W, chain A/B, )
2: VAR_005569 (Q71R, chain A/B, )
3: VAR_053957 (H360P, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_053956
R
54
W
QPCT_HUMAN
Polymorphism
2255991
A/B
R
54
W
2
UniProt
VAR_005569
Q
71
R
QPCT_HUMAN
Polymorphism
---
A/B
Q
71
R
3
UniProt
VAR_053957
H
360
P
QPCT_HUMAN
Polymorphism
4670696
A/B
H
360
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(7, 14)
Info
All Exons
Exon 1.1a (A:33-40 | B:33-40)
Exon 1.2 (A:41-89 | B:41-89)
Exon 1.4a (A:90-181 | B:90-181)
Exon 1.5b (A:190-241 | B:190-241)
Exon 1.7b (A:242-275 | B:242-275)
Exon 1.8 (A:275-314 | B:275-314)
Exon 1.9d (A:314-361 | B:314-361)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4a
4: Boundary 1.4a/1.5b
5: Boundary 1.5b/1.7b
6: Boundary 1.7b/1.8
7: Boundary 1.8/1.9d
8: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000338415
1a
ENSE00001279566
chr2:
37571717-37571994
278
QPCT_HUMAN
1-40
40
2
A:33-40
B:33-40
8
8
1.2
ENST00000338415
2
ENSE00001279532
chr2:
37579932-37580078
147
QPCT_HUMAN
41-89
49
2
A:41-89
B:41-89
49
49
1.4a
ENST00000338415
4a
ENSE00001279523
chr2:
37586723-37587001
279
QPCT_HUMAN
90-182
93
2
A:90-181
B:90-181
92
92
1.5b
ENST00000338415
5b
ENSE00000747404
chr2:
37594375-37594551
177
QPCT_HUMAN
183-241
59
2
A:190-241
B:190-241
52
52
1.7b
ENST00000338415
7b
ENSE00000747405
chr2:
37596828-37596927
100
QPCT_HUMAN
242-275
34
2
A:242-275
B:242-275
34
34
1.8
ENST00000338415
8
ENSE00001279502
chr2:
37599499-37599615
117
QPCT_HUMAN
275-314
40
2
A:275-314
B:275-314
40
40
1.9d
ENST00000338415
9d
ENSE00001379586
chr2:
37599825-37600465
641
QPCT_HUMAN
314-361
48
2
A:314-361
B:314-361
48
48
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2afua1 (A:33-361)
1b: SCOP_d2afub_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Glutaminyl-peptide cyclotransferase-like
(22)
Protein domain
:
Glutaminyl-peptide cyclotransferase, QPCT
(22)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2afua1
A:33-361
1b
d2afub_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (121 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (342 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2AFU
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help