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2AFG
Asym. Unit
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Asym.Unit (88 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
2.0 ANGSTROM X-RAY STRUCTURE OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR
Authors
:
M. Blaber, J. Disalvo, K. A. Thomas
Date
:
21 Jul 95 (Deposition) - 15 Oct 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Blaber, J. Disalvo, K. A. Thomas
X-Ray Crystal Structure Of Human Acidic Fibroblast Growth Factor.
Biochemistry V. 35 2086 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:18 , LYS A:112 , LYS A:113 , LYS A:118 , HOH A:159
BINDING SITE FOR RESIDUE SO4 A 150
2
AC2
SOFTWARE
ASN B:18 , LYS B:112 , LYS B:113 , LYS B:118 , HOH B:158
BINDING SITE FOR RESIDUE SO4 B 150
3
AC3
SOFTWARE
ASN C:18 , LYS C:112 , LYS C:113 , LYS C:118
BINDING SITE FOR RESIDUE SO4 C 150
4
AC4
SOFTWARE
ASN D:18 , LYS D:112 , LYS D:113 , LYS D:118
BINDING SITE FOR RESIDUE SO4 D 150
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:71-94,B:71-94,C:71-94,D:71-94)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
4
A:71-94
B:71-94
C:71-94
D:71-94
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Exons
(3, 12)
Info
All Exons
Exon 1.8b (A:10-42 | B:10-42 | C:11-42 | D:11...)
Exon 1.9b (A:42-76 | B:42-76 | C:42-76 | D:42...)
Exon 1.10f (A:77-138 | B:77-138 | C:77-137 | D...)
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All Exon Boundaries
1: Boundary 1.3/1.8b
2: Boundary 1.8b/1.9b
3: Boundary 1.9b/1.10f
4: Boundary 1.10f/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000378046
3
ENSE00001476010
chr5:
142065237-142065079
159
FGF1_HUMAN
-
0
0
-
-
1.8b
ENST00000378046
8b
ENSE00002155500
chr5:
141993726-141993524
203
FGF1_HUMAN
1-57
57
4
A:10-42
B:10-42
C:11-42
D:11-42
33
33
32
32
1.9b
ENST00000378046
9b
ENSE00000766692
chr5:
141980370-141980267
104
FGF1_HUMAN
57-91
35
4
A:42-76
B:42-76
C:42-76
D:42-76
35
35
35
35
1.10f
ENST00000378046
10f
ENSE00001476009
chr5:
141975049-141972934
2116
FGF1_HUMAN
92-155
64
4
A:77-138
B:77-138
C:77-137
D:77-138
62
62
61
62
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2afga_ (A:)
1b: SCOP_d2afgb_ (B:)
1c: SCOP_d2afgc_ (C:)
1d: SCOP_d2afgd_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d2afga_
A:
1b
d2afgb_
B:
1c
d2afgc_
C:
1d
d2afgd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2afgA00 (A:10-138)
1b: CATH_2afgB00 (B:10-138)
1c: CATH_2afgD00 (D:11-138)
1d: CATH_2afgC00 (C:11-137)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
1a
2afgA00
A:10-138
1b
2afgB00
B:10-138
1c
2afgD00
D:11-138
1d
2afgC00
C:11-137
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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