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2AEX
Biol. Unit 1
Info
Asym.Unit (70 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
THE 1.58A CRYSTAL STRUCTURE OF HUMAN COPROPORPHYRINOGEN OXIDASE REVEALS THE STRUCTURAL BASIS OF HEREDITARY COPROPORPHYRIA
Authors
:
D. S. Lee, E. Flachsova, M. Bodnarova, B. Demeler, P. Martasek, C. S. Ram
Date
:
24 Jul 05 (Deposition) - 02 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Flat Beta-Sheet Sandwiched By Helices, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Lee, E. Flachsova, M. Bodnarova, B. Demeler, P. Martasek, C. S. Raman
Structural Basis Of Hereditary Coproporphyria.
Proc. Natl. Acad. Sci. Usa V. 102 14232 2005
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:244 , HIS A:258 , ASN A:260 , ARG A:262 , GLY A:406 , GLY A:411 , SER A:412 , ARG A:413 , SER A:416 , HOH A:635 , HOH A:636 , HOH A:640 , HOH A:641 , HOH A:663 , HOH A:664 , HOH A:844
BINDING SITE FOR RESIDUE CIT A 500
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SAPs(SNPs)/Variants
(19, 38)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_023444 (V135A, chain A, )
02: VAR_002152 (G189S, chain A, )
03: VAR_002153 (G197W, chain A, )
04: VAR_002154 (E201K, chain A, )
05: VAR_019067 (S208F, chain A, )
06: VAR_023445 (L214R, chain A, )
07: VAR_023446 (P249R, chain A, )
08: VAR_002155 (P249S, chain A, )
09: VAR_002156 (N272H, chain A, )
10: VAR_058005 (G279R, chain A, )
11: VAR_002157 (G280R, chain A, )
12: VAR_002158 (V294I, chain A, )
13: VAR_002159 (H295D, chain A, )
14: VAR_019068 (R328C, chain A, )
15: VAR_002160 (R331W, chain A, )
16: VAR_048827 (R352C, chain A, )
17: VAR_002162 (K404E, chain A, )
18: VAR_002163 (W427R, chain A, )
19: VAR_019069 (R447C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023444
V
135
A
HEM6_HUMAN
Disease (HCP)
---
A
V
135
A
02
UniProt
VAR_002152
G
189
S
HEM6_HUMAN
Disease (HCP)
---
A
G
189
S
03
UniProt
VAR_002153
G
197
W
HEM6_HUMAN
Disease (HCP)
---
A
G
197
W
04
UniProt
VAR_002154
E
201
K
HEM6_HUMAN
Disease (HCP)
---
A
E
201
K
05
UniProt
VAR_019067
S
208
F
HEM6_HUMAN
Disease (HCP)
28929486
A
S
208
F
06
UniProt
VAR_023445
L
214
R
HEM6_HUMAN
Disease (HCP)
---
A
L
214
R
07
UniProt
VAR_023446
P
249
R
HEM6_HUMAN
Disease (HCP)
---
A
P
249
R
08
UniProt
VAR_002155
P
249
S
HEM6_HUMAN
Disease (HCP)
---
A
P
249
S
09
UniProt
VAR_002156
N
272
H
HEM6_HUMAN
Polymorphism
1131857
A
N
272
H
10
UniProt
VAR_058005
G
279
R
HEM6_HUMAN
Disease (HCP)
---
A
G
279
R
11
UniProt
VAR_002157
G
280
R
HEM6_HUMAN
Disease (HCP)
---
A
G
280
R
12
UniProt
VAR_002158
V
294
I
HEM6_HUMAN
Polymorphism
2228056
A
V
294
I
13
UniProt
VAR_002159
H
295
D
HEM6_HUMAN
Disease (HCP)
---
A
H
295
D
14
UniProt
VAR_019068
R
328
C
HEM6_HUMAN
Disease (HCP)
28929487
A
R
328
C
15
UniProt
VAR_002160
R
331
W
HEM6_HUMAN
Disease (HCP)
---
A
R
331
W
16
UniProt
VAR_048827
R
352
C
HEM6_HUMAN
Polymorphism
11921054
A
R
352
C
17
UniProt
VAR_002162
K
404
E
HEM6_HUMAN
Disease (HCP)
---
A
K
404
E
18
UniProt
VAR_002163
W
427
R
HEM6_HUMAN
Disease (HCP)
---
A
W
427
R
19
UniProt
VAR_019069
R
447
C
HEM6_HUMAN
Disease (HCP)
28931603
A
R
447
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: COPROGEN_OXIDASE (A:316-340)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPROGEN_OXIDASE
PS01021
Coproporphyrinogen III oxidase signature.
HEM6_HUMAN
316-340
2
A:316-340
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2aexa_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Coproporphyrinogen III oxidase
(24)
Superfamily
:
Coproporphyrinogen III oxidase
(11)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2aexa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2aexA00 (A:119-454)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
oxygen-dependent coproporphyrinogen oxidase
(11)
Homologous Superfamily
:
oxygen-dependent coproporphyrinogen oxidase
(11)
Human (Homo sapiens)
(1)
1a
2aexA00
A:119-454
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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