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2AEX
Asym. Unit
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Asym.Unit (70 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
THE 1.58A CRYSTAL STRUCTURE OF HUMAN COPROPORPHYRINOGEN OXIDASE REVEALS THE STRUCTURAL BASIS OF HEREDITARY COPROPORPHYRIA
Authors
:
D. S. Lee, E. Flachsova, M. Bodnarova, B. Demeler, P. Martasek, C. S. Ram
Date
:
24 Jul 05 (Deposition) - 02 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Flat Beta-Sheet Sandwiched By Helices, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Lee, E. Flachsova, M. Bodnarova, B. Demeler, P. Martasek, C. S. Raman
Structural Basis Of Hereditary Coproporphyria.
Proc. Natl. Acad. Sci. Usa V. 102 14232 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:244 , HIS A:258 , ASN A:260 , ARG A:262 , GLY A:406 , GLY A:411 , SER A:412 , ARG A:413 , SER A:416 , HOH A:635 , HOH A:636 , HOH A:640 , HOH A:641 , HOH A:663 , HOH A:664 , HOH A:844
BINDING SITE FOR RESIDUE CIT A 500
[
close Site info
]
SAPs(SNPs)/Variants
(19, 19)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_023444 (V135A, chain A, )
02: VAR_002152 (G189S, chain A, )
03: VAR_002153 (G197W, chain A, )
04: VAR_002154 (E201K, chain A, )
05: VAR_019067 (S208F, chain A, )
06: VAR_023445 (L214R, chain A, )
07: VAR_023446 (P249R, chain A, )
08: VAR_002155 (P249S, chain A, )
09: VAR_002156 (N272H, chain A, )
10: VAR_058005 (G279R, chain A, )
11: VAR_002157 (G280R, chain A, )
12: VAR_002158 (V294I, chain A, )
13: VAR_002159 (H295D, chain A, )
14: VAR_019068 (R328C, chain A, )
15: VAR_002160 (R331W, chain A, )
16: VAR_048827 (R352C, chain A, )
17: VAR_002162 (K404E, chain A, )
18: VAR_002163 (W427R, chain A, )
19: VAR_019069 (R447C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023444
V
135
A
HEM6_HUMAN
Disease (HCP)
---
A
V
135
A
02
UniProt
VAR_002152
G
189
S
HEM6_HUMAN
Disease (HCP)
---
A
G
189
S
03
UniProt
VAR_002153
G
197
W
HEM6_HUMAN
Disease (HCP)
---
A
G
197
W
04
UniProt
VAR_002154
E
201
K
HEM6_HUMAN
Disease (HCP)
---
A
E
201
K
05
UniProt
VAR_019067
S
208
F
HEM6_HUMAN
Disease (HCP)
28929486
A
S
208
F
06
UniProt
VAR_023445
L
214
R
HEM6_HUMAN
Disease (HCP)
---
A
L
214
R
07
UniProt
VAR_023446
P
249
R
HEM6_HUMAN
Disease (HCP)
---
A
P
249
R
08
UniProt
VAR_002155
P
249
S
HEM6_HUMAN
Disease (HCP)
---
A
P
249
S
09
UniProt
VAR_002156
N
272
H
HEM6_HUMAN
Polymorphism
1131857
A
N
272
H
10
UniProt
VAR_058005
G
279
R
HEM6_HUMAN
Disease (HCP)
---
A
G
279
R
11
UniProt
VAR_002157
G
280
R
HEM6_HUMAN
Disease (HCP)
---
A
G
280
R
12
UniProt
VAR_002158
V
294
I
HEM6_HUMAN
Polymorphism
2228056
A
V
294
I
13
UniProt
VAR_002159
H
295
D
HEM6_HUMAN
Disease (HCP)
---
A
H
295
D
14
UniProt
VAR_019068
R
328
C
HEM6_HUMAN
Disease (HCP)
28929487
A
R
328
C
15
UniProt
VAR_002160
R
331
W
HEM6_HUMAN
Disease (HCP)
---
A
R
331
W
16
UniProt
VAR_048827
R
352
C
HEM6_HUMAN
Polymorphism
11921054
A
R
352
C
17
UniProt
VAR_002162
K
404
E
HEM6_HUMAN
Disease (HCP)
---
A
K
404
E
18
UniProt
VAR_002163
W
427
R
HEM6_HUMAN
Disease (HCP)
---
A
W
427
R
19
UniProt
VAR_019069
R
447
C
HEM6_HUMAN
Disease (HCP)
28931603
A
R
447
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: COPROGEN_OXIDASE (A:316-340)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPROGEN_OXIDASE
PS01021
Coproporphyrinogen III oxidase signature.
HEM6_HUMAN
316-340
1
A:316-340
[
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]
Exons
(7, 7)
Info
All Exons
Exon 1.1a (A:119-186)
Exon 1.2a (A:186-234)
Exon 1.3a (A:234-271)
Exon 1.5 (A:271-318)
Exon 1.6b (A:318-391)
Exon 1.7b (A:391-426)
Exon 1.8 (A:426-454)
View:
Select:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3a
4: Boundary 1.3a/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/1.7b
7: Boundary 1.7b/1.8
8: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264193
1a
ENSE00002082215
chr3:
98312567-98311793
775
HEM6_HUMAN
1-186
186
1
A:119-186
68
1.2a
ENST00000264193
2a
ENSE00000774427
chr3:
98309999-98309856
144
HEM6_HUMAN
186-234
49
1
A:186-234
49
1.3a
ENST00000264193
3a
ENSE00000774428
chr3:
98309586-98309476
111
HEM6_HUMAN
234-271
38
1
A:234-271
38
1.5
ENST00000264193
5
ENSE00000774429
chr3:
98307698-98307557
142
HEM6_HUMAN
271-318
48
1
A:271-318
48
1.6b
ENST00000264193
6b
ENSE00000520584
chr3:
98304503-98304285
219
HEM6_HUMAN
318-391
74
1
A:318-391
74
1.7b
ENST00000264193
7b
ENSE00000774433
chr3:
98300355-98300251
105
HEM6_HUMAN
391-426
36
1
A:391-426
36
1.8
ENST00000264193
8
ENSE00000817865
chr3:
98299614-98298286
1329
HEM6_HUMAN
426-454
29
1
A:426-454
29
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2aexa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Coproporphyrinogen III oxidase
(24)
Superfamily
:
Coproporphyrinogen III oxidase
(11)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2aexa_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2aexA00 (A:119-454)
View:
Select:
Label:
Classes
(
)
(
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Architectures
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)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
oxygen-dependent coproporphyrinogen oxidase
(11)
Homologous Superfamily
:
oxygen-dependent coproporphyrinogen oxidase
(11)
Human (Homo sapiens)
(1)
1a
2aexA00
A:119-454
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Chain A
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