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2AEP
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (463 KB)
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(1)
Title
:
AN EPIDEMIOLOGICALLY SIGNIFICANT EPITOPE OF A 1998 INFLUENZA VIRUS NEURAMINIDASE FORMS A HIGHLY HYDRATED INTERFACE IN THE NA-ANTIBODY COMPLEX.
Authors
:
L. Venkatramani, E. Bochkareva, J. T. Lee, U. Gulati, W. G. Laver, A. Boc G. M. Air
Date
:
23 Jul 05 (Deposition) - 20 Dec 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (4x)
Keywords
:
Influenza Virus Neuraminidase-Fab Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
L. Venkatramani, E. Bochkareva, J. T. Lee, U. Gulati, W. G. Laver, A. Bochkarev, G. M. Air
An Epidemiologically Significant Epitope Of A 1998 Human Influenza Virus Neuraminidase Forms A Highly Hydrated Interface In The Na-Antibody Complex
J. Mol. Biol. V. 356 651 2006
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
4
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:245 , SER A:247 , ASP H:96 , ASN H:100 , ASP H:101 , HOH H:715 , HOH H:765 , TYR L:49 , TYR L:55 , SER L:56
BINDING SITE FOR RESIDUE GLC H 701
02
AC2
SOFTWARE
ILE A:233 , ASN A:234 , THR A:236 , VAL A:307 , LYS A:308 , NAG A:634 , HOH A:878
BINDING SITE FOR RESIDUE GLC A 702
03
AC3
SOFTWARE
GLU A:83 , ASN A:86 , SER A:88 , TYR A:284 , NAG A:634 , HOH A:1047
BINDING SITE FOR RESIDUE NAG A 686
04
AC4
SOFTWARE
ARG A:143 , ASN A:146 , TRP A:437 , HOH A:1039
BINDING SITE FOR RESIDUE NAG A 646
05
AC5
SOFTWARE
ASN A:200 , TYR A:453 , GLY A:454 , THR A:455 , NAG A:704B , HOH A:809 , HOH A:858 , HOH A:865 , HOH A:977 , ASN L:92 , ARG L:93 , TYR L:94
BINDING SITE FOR RESIDUE NAG A 703A
06
AC6
SOFTWARE
ASN A:393 , ARG A:394 , NAG A:703A , BMA A:705C , HOH A:869 , HOH A:977 , HOH A:982 , MAN L:217H , HOH L:297
BINDING SITE FOR RESIDUE NAG A 704B
07
AC7
SOFTWARE
GLN A:391 , ILE A:392 , ASN A:393 , ARG A:394 , NAG A:704B , MAN A:706D , HOH A:869 , HOH A:935 , MAN L:215F
BINDING SITE FOR RESIDUE BMA A 705C
08
AC8
SOFTWARE
GLN A:391 , ARG A:394 , BMA A:705C , MAN A:707E , HOH A:810 , HOH A:847 , HOH A:859 , HOH A:929
BINDING SITE FOR RESIDUE MAN A 706D
09
AC9
SOFTWARE
MAN A:706D , HOH A:1048
BINDING SITE FOR RESIDUE MAN A 707E
10
BC1
SOFTWARE
BMA A:705C , MAN L:216G , MAN L:217H
BINDING SITE FOR RESIDUE MAN L 215F
11
BC2
SOFTWARE
MAN L:215F
BINDING SITE FOR RESIDUE MAN L 216G
12
BC3
SOFTWARE
NAG A:704B , ARG L:93 , MAN L:215F , HOH L:297
BINDING SITE FOR RESIDUE MAN L 217H
13
BC4
SOFTWARE
ASN A:234 , TYR A:284 , PRO A:285 , NAG A:686 , GLC A:702
BINDING SITE FOR RESIDUE NAG A 634
14
BC5
SOFTWARE
ASN A:329 , SER A:332 , HOH A:823 , HOH A:1054
BINDING SITE FOR RESIDUE NAG A 629
15
BC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , HIS A:347 , HOH A:808
BINDING SITE FOR RESIDUE CA A 601
16
BC7
SOFTWARE
ARG A:118 , ASP A:151 , ARG A:292 , ARG A:371 , TYR A:406 , HOH A:857 , HOH A:1018
BINDING SITE FOR RESIDUE SO4 A 602
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2aepa1 (A:83-469)
2a: SCOP_d2aepl1 (L:1-107)
3a: SCOP_d2aeph1 (H:114-190)
View:
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Classes
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(
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Folds
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Superfamilies
(
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(
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Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d2aepa1
A:83-469
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
2a
d2aepl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
3a
d2aeph1
H:114-190
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2aepA00 (A:82-469)
2a: CATH_2aepH01 (H:1-113)
2b: CATH_2aepL01 (L:1-141)
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Topologies
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 228928. Strain: a/memphis/31/98(h3n2). Mus musculus. House mouse. Organism_taxid: 10090.
(1)
1a
2aepA00
A:82-469
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Influenza a virus. Organism_taxid: 228928. Strain: a/memphis/31/98(h3n2). Mus musculus. House mouse. Organism_taxid: 10090.
(1)
2a
2aepH01
H:1-113
2b
2aepL01
L:1-141
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Backbone
Sidechain
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain H
Chain L
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (127 KB)
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