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2AE7
Biol. Unit 1
Info
Asym.Unit (159 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (53 KB)
Biol.Unit 4 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA1,4-GALACTOSYLTRANSFERASE-I (M340H-B4GAL-T1) IN COMPLEX WITH PENTASACCHARIDE
Authors
:
V. Ramasamy, B. Ramakrishnan, E. Boeggeman, D. M. Ratner, P. H. Seeberg P. K. Qasba
Date
:
21 Jul 05 (Deposition) - 04 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Beta1, 4-Galactosyltransferase-I; Pentasaccharide; Closed Conformation; Mutant, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Ramasamy, B. Ramakrishnan, E. Boeggeman, D. M. Ratner, P. H. Seeberger, P. K. Qasba
Oligosaccharide Preferences Of Beta1, 4-Galactosyltransferase-I: Crystal Structures Of Met340His Mutant Of Human Beta1, 4-Galactosyltransferase-I With A Pentasaccharide And Trisaccharides Of The N-Glycan Moiety
J. Mol. Biol. V. 353 53 2005
[
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Hetero Components
(5, 8)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
7a: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSP... (UDHa)
7b: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSP... (UDHb)
7c: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSP... (UDHc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DIO
-1
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
GOL
1
Ligand/Ion
GLYCEROL
3
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
4
Ligand/Ion
SULFATE ION
7
UDH
1
Ligand/Ion
6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC8 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC7 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC4 (SOFTWARE)
11: DC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:276 , TYR A:282 , TYR A:285 , TRP A:310 , GLY A:311 , GLY A:312 , ASP A:314 , ASP A:315 , ARG A:355 , MAN A:406 , GOL A:415 , HOH A:605
BINDING SITE FOR RESIDUE NAG A 405
02
AC2
SOFTWARE
TYR A:282 , PHE A:356 , NAG A:405 , HOH A:605 , HOH A:873
BINDING SITE FOR RESIDUE MAN A 406
03
AC8
SOFTWARE
ASP A:250 , HIS A:340 , HIS A:343 , UDH A:399 , HOH A:482
BINDING SITE FOR RESIDUE MN A 400
04
BC2
SOFTWARE
GLU A:144 , PHE A:145 , ASN A:146 , ARG A:339 , ARG A:342
BINDING SITE FOR RESIDUE SO4 A 419
05
BC3
SOFTWARE
ASN A:160 , TYR A:167 , PRO A:169 , ARG A:170 , HOH A:524 , HOH A:659 , HOH A:681 , HOH A:866 , ARG C:342
BINDING SITE FOR RESIDUE SO4 A 420
06
BC4
SOFTWARE
ARG A:267
BINDING SITE FOR RESIDUE SO4 A 421
07
CC3
SOFTWARE
HIS A:343 , SER A:344 , HOH A:713
BINDING SITE FOR RESIDUE SO4 A 429
08
CC7
SOFTWARE
PRO A:183 , PHE A:184 , ARG A:185 , ARG A:187 , PHE A:222 , ASP A:248 , VAL A:249 , ASP A:250 , LYS A:275 , TRP A:310 , HIS A:340 , HIS A:343 , ARG A:345 , ASP A:346 , MN A:400 , GOL A:415 , HOH A:482 , HOH A:606 , HOH A:629 , HOH A:660
BINDING SITE FOR RESIDUE UDH A 399
09
DC3
SOFTWARE
PHE A:318 , MET A:326 , SER A:327 , ILE A:328 , PHE B:318 , ILE B:328 , HOH B:611 , HOH B:850
BINDING SITE FOR RESIDUE GOL B 413
10
DC4
SOFTWARE
SER A:368 , ASP A:369 , PHE B:184 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:529
BINDING SITE FOR RESIDUE GOL B 414
11
DC5
SOFTWARE
ARG A:224 , TRP A:310 , GLY A:311 , GLU A:313 , ASP A:314 , UDH A:399 , NAG A:405 , HOH A:540 , HOH A:652
BINDING SITE FOR RESIDUE GOL A 415
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_054020 (H257R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054020
H
257
R
B4GT1_HUMAN
Polymorphism
9169
A
H
257
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2ae7a_ (A:)
1b: SCOP_d2ae7b_ (B:)
1c: SCOP_d2ae7c_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d2ae7a_
A:
1b
d2ae7b_
B:
1c
d2ae7c_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2ae7A00 (A:127-398)
1b: CATH_2ae7B00 (B:127-398)
1c: CATH_2ae7C00 (C:127-398)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
2ae7A00
A:127-398
1b
2ae7B00
B:127-398
1c
2ae7C00
C:127-398
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (159 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
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Biol.Unit 3 (53 KB)
Header - Biol.Unit 3
Biol.Unit 4 (152 KB)
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