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2ACX
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF G PROTEIN COUPLED RECEPTOR KINASE 6 BOUND TO AMPPNP
Authors
:
D. T. Lodowski, V. M. Tesmer, J. L. Benovic, J. J. Tesmer
Date
:
19 Jul 05 (Deposition) - 25 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Kinase, G Protein, Grk, G Protein Coupled Receptor Kinase, Grk6, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. T. Lodowski, V. M. Tesmer, J. L. Benovic, J. J. Tesmer
The Structure Of G Protein-Coupled Receptor Kinase (Grk)-6 Defines A Second Lineage Of Grks.
J. Biol. Chem. V. 281 16785 2006
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ANP A:577
BINDING SITE FOR RESIDUE MG A 578
2
AC2
SOFTWARE
ANP B:577
BINDING SITE FOR RESIDUE MG B 578
3
AC3
SOFTWARE
ALA A:15 , ARG A:16 , SER A:27 , ARG A:187 , ARG A:206
BINDING SITE FOR RESIDUE PO4 A 579
4
AC4
SOFTWARE
ALA B:15 , ARG B:16 , SER B:27 , ARG B:187 , ARG B:206
BINDING SITE FOR RESIDUE PO4 B 579
5
AC5
SOFTWARE
ARG A:123 , LYS A:194 , GLY A:195 , GLY A:196 , VAL A:200 , ALA A:213 , LYS A:215 , THR A:264 , MET A:266 , LEU A:318 , ASP A:329 , MG A:578
BINDING SITE FOR RESIDUE ANP A 577
6
AC6
SOFTWARE
ARG B:123 , LYS B:194 , GLY B:195 , GLY B:196 , VAL B:200 , ALA B:213 , LYS B:215 , THR B:264 , MET B:266 , ASP B:329 , MG B:578
BINDING SITE FOR RESIDUE ANP B 577
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040524 (R31Q, chain A/B, )
2: VAR_040525 (T73M, chain A/B, )
3: VAR_040526 (I275M, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040524
R
31
Q
GRK6_HUMAN
Unclassified
---
A/B
R
31
Q
2
UniProt
VAR_040525
T
73
M
GRK6_HUMAN
Polymorphism
56382815
A/B
T
73
M
3
UniProt
VAR_040526
I
275
M
GRK6_HUMAN
Unclassified
---
A/B
I
275
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: RGS (A:59-171,B:59-171)
2: PROTEIN_KINASE_ATP (A:192-224,B:192-224)
3: PROTEIN_KINASE_ST (A:307-319,B:307-319)
4: AGC_KINASE_CTER (A:449-514,B:449-514)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
GRK6_HUMAN
59-171
2
A:59-171
B:59-171
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
GRK6_HUMAN
192-224
2
A:192-224
B:192-224
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
GRK6_HUMAN
307-319
2
A:307-319
B:307-319
4
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
GRK6_HUMAN
449-514
2
A:449-514
B:449-514
[
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]
Exons
(15, 30)
Info
All Exons
Exon 1.4a (A:14-16 | B:14-16)
Exon 1.5b (A:24-50 | B:24-50)
Exon 1.6b (A:50-87 | B:50-87)
Exon 1.7b (A:88-113 | B:88-113)
Exon 1.8 (A:114-147 | B:114-147)
Exon 1.9b (A:147-178 | B:147-178)
Exon 1.10 (A:178-199 | B:178-199)
Exon 1.11 (A:200-246 | B:200-246)
Exon 1.12b (A:247-310 | B:247-310 (gaps))
Exon 1.13 (A:310-323 | B:310-323)
Exon 1.14 (A:323-353 | B:323-353)
Exon 1.15b (A:353-422 | B:353-422 (gaps))
Exon 1.16a (A:423-468 | B:423-468)
Exon 1.17 (A:469-514 (gaps) | B:469-514 (gaps...)
Exon 1.18 (A:515-532 | B:515-535)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.4a
02: Boundary 1.4a/1.5b
03: Boundary 1.5b/1.6b
04: Boundary 1.6b/1.7b
05: Boundary 1.7b/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12b
10: Boundary 1.12b/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/1.15b
13: Boundary 1.15b/1.16a
14: Boundary 1.16a/1.17
15: Boundary 1.17/1.18
16: Boundary 1.18/1.20c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000355472
4a
ENSE00002047192
chr5:
176853679-176853898
220
GRK6_HUMAN
1-18
18
2
A:14-16
B:14-16
3
3
1.5b
ENST00000355472
5b
ENSE00000898139
chr5:
176857873-176857968
96
GRK6_HUMAN
18-50
33
2
A:24-50
B:24-50
27
27
1.6b
ENST00000355472
6b
ENSE00000898138
chr5:
176858996-176859108
113
GRK6_HUMAN
50-87
38
2
A:50-87
B:50-87
38
38
1.7b
ENST00000355472
7b
ENSE00001054992
chr5:
176859234-176859311
78
GRK6_HUMAN
88-113
26
2
A:88-113
B:88-113
26
26
1.8
ENST00000355472
8
ENSE00001054998
chr5:
176859707-176859807
101
GRK6_HUMAN
114-147
34
2
A:114-147
B:114-147
34
34
1.9b
ENST00000355472
9b
ENSE00000898134
chr5:
176860148-176860240
93
GRK6_HUMAN
147-178
32
2
A:147-178
B:147-178
32
32
1.10
ENST00000355472
10
ENSE00001721473
chr5:
176860348-176860411
64
GRK6_HUMAN
178-199
22
2
A:178-199
B:178-199
22
22
1.11
ENST00000355472
11
ENSE00001725586
chr5:
176860537-176860677
141
GRK6_HUMAN
200-246
47
2
A:200-246
B:200-246
47
47
1.12b
ENST00000355472
12b
ENSE00000898131
chr5:
176860915-176861105
191
GRK6_HUMAN
247-310
64
2
A:247-310
B:247-310 (gaps)
64
64
1.13
ENST00000355472
13
ENSE00000898130
chr5:
176861903-176861940
38
GRK6_HUMAN
310-323
14
2
A:310-323
B:310-323
14
14
1.14
ENST00000355472
14
ENSE00000898129
chr5:
176862033-176862122
90
GRK6_HUMAN
323-353
31
2
A:323-353
B:323-353
31
31
1.15b
ENST00000355472
15b
ENSE00001293713
chr5:
176863074-176863282
209
GRK6_HUMAN
353-422
70
2
A:353-422
B:353-422 (gaps)
70
70
1.16a
ENST00000355472
16a
ENSE00001310649
chr5:
176863394-176863531
138
GRK6_HUMAN
423-468
46
2
A:423-468
B:423-468
46
46
1.17
ENST00000355472
17
ENSE00000828943
chr5:
176867701-176867838
138
GRK6_HUMAN
469-514
46
2
A:469-514 (gaps)
B:469-514 (gaps)
46
46
1.18
ENST00000355472
18
ENSE00001054991
chr5:
176867920-176868054
135
GRK6_HUMAN
515-559
45
2
A:515-532
B:515-535
18
21
1.20c
ENST00000355472
20c
ENSE00001515898
chr5:
176868738-176869831
1094
GRK6_HUMAN
560-576
17
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2acxA02 (A:179-269)
1b: CATH_2acxB02 (B:179-269)
2a: CATH_2acxB03 (B:270-468)
2b: CATH_2acxA03 (A:270-468)
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)
Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2acxA02
A:179-269
1b
2acxB02
B:179-269
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2acxB03
B:270-468
2b
2acxA03
A:270-468
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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