PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2ACS
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (57 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
AN ANION BINDING SITE IN HUMAN ALDOSE REDUCTASE: MECHANISTIC IMPLICATIONS FOR THE BINDING OF CITRATE, CACODYLATE, AND GLUCOSE-6-PHOSPHATE
Authors
:
D. H. Harrison, K. M. Bohren, K. H. Gabbay, G. A. Petsko, D. Ringe
Date
:
15 Apr 94 (Deposition) - 31 Jul 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. H. Harrison, K. M. Bohren, D. Ringe, G. A. Petsko, K. H. Gabbay
An Anion Binding Site In Human Aldose Reductase: Mechanistic Implications For The Binding Of Citrate, Cacodylate, And Glucose 6-Phosphate.
Biochemistry V. 33 2011 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: ACT (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:18 , THR A:19 , TRP A:20 , LYS A:21 , ASP A:43 , TYR A:48 , LYS A:77 , HIS A:110 , SER A:159 , ASN A:160 , GLN A:183 , GLN A:197 , TYR A:209 , SER A:210 , PRO A:211 , LEU A:212 , GLY A:213 , SER A:214 , PRO A:215 , ASP A:216 , LEU A:228 , ALA A:245 , ILE A:260 , PRO A:261 , LYS A:262 , SER A:263 , VAL A:264 , THR A:265 , ARG A:268 , GLU A:271 , ASN A:272 , CIT A:317 , HOH A:790 , HOH A:794 , HOH A:917
BINDING SITE FOR RESIDUE NAP A 316
2
AC2
SOFTWARE
TRP A:20 , TYR A:48 , TRP A:79 , HIS A:110 , TRP A:111 , PHE A:122 , NAP A:316 , HOH A:876 , HOH A:880 , HOH A:931
BINDING SITE FOR RESIDUE CIT A 317
3
ACT
UNKNOWN
NAP A:316 , CIT A:317 , HIS A:110 , TYR A:48 , LYS A:77 , CYS A:298
NULL
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014743 (I14F, chain A, )
2: VAR_014744 (H41L, chain A, )
3: VAR_014745 (L72V, chain A, )
4: VAR_048213 (K89E, chain A, )
5: VAR_014746 (G203S, chain A, )
6: VAR_014747 (T287I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014743
I
15
F
ALDR_HUMAN
Polymorphism
5054
A
I
14
F
2
UniProt
VAR_014744
H
42
L
ALDR_HUMAN
Polymorphism
5056
A
H
41
L
3
UniProt
VAR_014745
L
73
V
ALDR_HUMAN
Polymorphism
5057
A
L
72
V
4
UniProt
VAR_048213
K
90
E
ALDR_HUMAN
Polymorphism
2229542
A
K
89
E
5
UniProt
VAR_014746
G
204
S
ALDR_HUMAN
Polymorphism
5061
A
G
203
S
6
UniProt
VAR_014747
T
288
I
ALDR_HUMAN
Polymorphism
5062
A
T
287
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:38-55)
2: ALDOKETO_REDUCTASE_2 (A:144-161)
3: ALDOKETO_REDUCTASE_3 (A:260-275)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
ALDR_HUMAN
39-56
1
A:38-55
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
ALDR_HUMAN
145-162
1
A:144-161
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
ALDR_HUMAN
261-276
1
A:260-275
[
close PROSITE info
]
Exons
(10, 10)
Info
All Exons
Exon 1.1d (A:2-21)
Exon 1.2b (A:22-77)
Exon 1.4b (A:78-116)
Exon 1.5a (A:117-142)
Exon 1.5i (A:143-183)
Exon 1.6 (A:184-219)
Exon 1.7a (A:219-246)
Exon 1.7i (A:247-274)
Exon 1.8a (A:275-302)
Exon 1.9d (A:302-315)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1d
02: Boundary 1.1d/1.2b
03: Boundary 1.2b/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.5i
06: Boundary 1.5i/1.6
07: Boundary 1.6/1.7a
08: Boundary 1.7a/1.7i
09: Boundary 1.7i/1.8a
10: Boundary 1.8a/1.9d
11: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000285930
1d
ENSE00001930160
chr7:
134143894-134143749
146
ALDR_HUMAN
1-22
22
1
A:2-21
20
1.2b
ENST00000285930
2b
ENSE00001803238
chr7:
134136505-134136338
168
ALDR_HUMAN
23-78
56
1
A:22-77
56
1.4b
ENST00000285930
4b
ENSE00001325879
chr7:
134135654-134135538
117
ALDR_HUMAN
79-117
39
1
A:78-116
39
1.5a
ENST00000285930
5a
ENSE00001175544
chr7:
134134549-134134472
78
ALDR_HUMAN
118-143
26
1
A:117-142
26
1.5i
ENST00000285930
5i
ENSE00001752942
chr7:
134133871-134133749
123
ALDR_HUMAN
144-184
41
1
A:143-183
41
1.6
ENST00000285930
6
ENSE00001175532
chr7:
134133245-134133139
107
ALDR_HUMAN
185-220
36
1
A:184-219
36
1.7a
ENST00000285930
7a
ENSE00001625579
chr7:
134132813-134132732
82
ALDR_HUMAN
220-247
28
1
A:219-246
28
1.7i
ENST00000285930
7i
ENSE00001795277
chr7:
134132133-134132050
84
ALDR_HUMAN
248-275
28
1
A:247-274
28
1.8a
ENST00000285930
8a
ENSE00001675790
chr7:
134130072-134129990
83
ALDR_HUMAN
276-303
28
1
A:275-302
28
1.9d
ENST00000285930
9d
ENSE00001174667
chr7:
134127522-134127127
396
ALDR_HUMAN
303-316
14
1
A:302-315
14
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2acsa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Aldose reductase (aldehyde reductase)
(107)
Human (Homo sapiens) [TaxId: 9606]
(96)
1a
d2acsa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2acsA00 (A:2-315)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2acsA00
A:2-315
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (61 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2ACS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help