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2ACF
Biol. Unit 4
Info
Asym.Unit (136 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (36 KB)
Biol.Unit 4 (35 KB)
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(1)
Title
:
NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS
Authors
:
K. S. Saikatendu, J. S. Joseph, V. Subramanian, B. W. Neuman, M. J. Buchm R. C. Stevens, P. Kuhn, Joint Center For Structural Genomics (Jc
Date
:
18 Jul 05 (Deposition) - 14 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Adrp Domain, Sars Nsp-3, Appr-1-P Phosphatase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. S. Saikatendu, J. S. Joseph, V. Subramanian, T. Clayton, M. Griffith, K. Moy, J. Velasquez, B. W. Neuman, M. J. Buchmeier, R. C. Stevens, P. Kuhn
Structural Basis Of Severe Acute Respiratory Syndrome Coronavirus Adp-Ribose-1''-Phosphate Dephosphorylation By A Conserved Domain Of Nsp3.
Structure V. 13 1665 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC6 (SOFTWARE)
5: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LYS A:226 , GLN A:244 , ASP A:248 , HOH A:1192 , LYS D:226 , GLN D:244 , ASP D:248 , HOH D:1013 , HOH D:1036 , HOH D:1086
BINDING SITE FOR RESIDUE GOL A 1002
2
AC3
SOFTWARE
GLY D:229 , GLY D:230 , GLY D:233 , ALA D:234 , ARG D:357 , VAL D:358 , HOH D:1172 , HOH D:1175
BINDING SITE FOR RESIDUE GOL D 1003
3
AC4
SOFTWARE
ALA B:220 , ALA B:221 , ASN B:222 , LYS B:226 , GLY B:228 , GLY B:229 , ALA B:232 , PHE B:314 , HOH B:1010 , HOH B:1142 , HOH B:1267 , ASN D:283 , HOH D:1184
BINDING SITE FOR RESIDUE GOL B 1004
4
AC6
SOFTWARE
ILE C:288 , GLN C:289 , LYS C:292 , VAL C:324 , HOH C:1030 , HOH C:1039 , HOH C:1195 , HIS D:224 , PRO D:256 , HOH D:1008
BINDING SITE FOR RESIDUE GOL C 1006
5
BC2
SOFTWARE
GLY A:228 , GLY A:229 , HOH A:1043 , LEU C:282 , ASN C:283 , HOH C:1055 , HOH C:1219 , LYS D:252 , HOH D:1051
BINDING SITE FOR RESIDUE GOL C 1011
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_R1AB_CVHSA_011 (N186H, chain D, )
02: VAR_R1A_CVHSA_011 (N186H, chain D, )
03: VAR_R1AB_CVHSA_012 (V203A, chain D, )
04: VAR_R1A_CVHSA_012 (V203A, chain D, )
05: VAR_R1AB_CVHSA_013 (I205T, chain D, )
06: VAR_R1A_CVHSA_013 (I205T, chain D, )
07: VAR_R1AB_CVHSA_014 (I303T, chain D, )
08: VAR_R1A_CVHSA_014 (I303T, chain D, )
09: VAR_R1AB_CVHSA_015 (P318L, chain D, )
10: VAR_R1A_CVHSA_015 (P318L, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_R1AB_CVHSA_011
*
N
1004
H
R1AB_CVHSA
---
---
D
N
186
H
02
UniProt
VAR_R1A_CVHSA_011
*
N
1004
H
R1A_CVHSA
---
---
D
N
186
H
03
UniProt
VAR_R1AB_CVHSA_012
*
V
1021
A
R1AB_CVHSA
---
---
D
V
203
A
04
UniProt
VAR_R1A_CVHSA_012
*
V
1021
A
R1A_CVHSA
---
---
D
V
203
A
05
UniProt
VAR_R1AB_CVHSA_013
*
I
1023
T
R1AB_CVHSA
---
---
D
I
205
T
06
UniProt
VAR_R1A_CVHSA_013
*
I
1023
T
R1A_CVHSA
---
---
D
I
205
T
07
UniProt
VAR_R1AB_CVHSA_014
*
I
1121
T
R1AB_CVHSA
---
---
D
I
303
T
08
UniProt
VAR_R1A_CVHSA_014
*
I
1121
T
R1A_CVHSA
---
---
D
I
303
T
09
UniProt
VAR_R1AB_CVHSA_015
*
P
1136
L
R1AB_CVHSA
---
---
D
P
318
L
10
UniProt
VAR_R1A_CVHSA_015
*
P
1136
L
R1A_CVHSA
---
---
D
P
318
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MACRO (D:185-351)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MACRO
PS51154
Macro domain profile.
R1A_CVHSA
1003-1169
1
-
-
-
D:185-351
R1AB_CVHSA
1003-1169
1
-
-
-
D:185-351
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2acfb_ (B:)
1b: SCOP_d2acfc_ (C:)
1c: SCOP_d2acfd_ (D:)
2a: SCOP_d2acfa1 (A:184-351)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Macro domain-like
(42)
Superfamily
:
Macro domain-like
(42)
Family
:
Macro domain
(20)
Protein domain
:
automated matches
(4)
Sars coronavirus tor2 [TaxId: 227984]
(1)
1a
d2acfb_
B:
1b
d2acfc_
C:
1c
d2acfd_
D:
Protein domain
:
Replicase polyprotein 1ab
(1)
SARS coronavirus [TaxId: 227859]
(1)
2a
d2acfa1
A:184-351
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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Asym.Unit (136 KB)
Header - Asym.Unit
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Biol.Unit 3 (36 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
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