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Getting 'Exon' information from database.
2ABT
Theor. Model
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Theoretical Model (99 KB)
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(1)
Title
:
HUMAN 15-LIPOXYGENASE
Authors
:
P. Arul Prakasam, P. P. Mathur
Date
:
16 Jul 05 (Deposition) - 02 Aug 05 (Release) - 02 Aug 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Human 12-Lipoxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Arul Prakasam, P. P. Mathur
Structure Of Human 15-Lipoxygenase
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE2
1
Ligand/Ion
FE (II) ION
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018746 (D89H, chain A, )
2: VAR_035036 (G101V, chain A, )
3: VAR_018747 (N102K, chain A, )
4: VAR_018748 (R204Q, chain A, )
5: VAR_035037 (V238M, chain A, )
6: VAR_035038 (A460P, chain A, )
7: VAR_035039 (T559M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018746
D
90
H
LOX15_HUMAN
Polymorphism
11568142
A
D
89
H
2
UniProt
VAR_035036
G
102
V
LOX15_HUMAN
Polymorphism
41439950
A
G
101
V
3
UniProt
VAR_018747
N
103
K
LOX15_HUMAN
Polymorphism
11568099
A
N
102
K
4
UniProt
VAR_018748
R
205
Q
LOX15_HUMAN
Polymorphism
11568101
A
R
204
Q
5
UniProt
VAR_035037
V
239
M
LOX15_HUMAN
Polymorphism
3892408
A
V
238
M
6
UniProt
VAR_035038
A
461
P
LOX15_HUMAN
Polymorphism
17852628
A
A
460
P
7
UniProt
VAR_035039
T
560
M
LOX15_HUMAN
Polymorphism
34210653
A
T
559
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PLAT (A:1-113)
2: LIPOXYGENASE_3 (A:113-661)
3: LIPOXYGENASE_1 (A:354-368)
4: LIPOXYGENASE_2 (A:381-391)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
LOX15_HUMAN
2-114
1
A:1-113
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
LOX15_HUMAN
114-662
1
A:113-661
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
LOX15_HUMAN
355-369
1
A:354-368
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
LOX15_HUMAN
382-392
1
A:381-391
[
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]
Exons
(14, 14)
Info
All Exons
Exon 1.1 (A:1-44)
Exon 1.2 (A:45-112)
Exon 1.3 (A:112-139)
Exon 1.4 (A:139-180)
Exon 1.5 (A:180-215)
Exon 1.6 (A:215-268)
Exon 1.7 (A:269-316)
Exon 1.8 (A:317-386)
Exon 1.9 (A:387-415)
Exon 1.10 (A:416-472)
Exon 1.11 (A:472-513)
Exon 1.12 (A:513-546)
Exon 1.13 (A:547-602)
Exon 1.14 (A:603-661)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/1.14
15: Boundary 1.14/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000293761
1
ENSE00001195427
chr17:
4544958-4544812
147
LOX15_HUMAN
1-45
45
1
A:1-44
44
1.2
ENST00000293761
2
ENSE00001061272
chr17:
4542926-4542725
202
LOX15_HUMAN
46-113
68
1
A:45-112
68
1.3
ENST00000293761
3
ENSE00001061268
chr17:
4542427-4542346
82
LOX15_HUMAN
113-140
28
1
A:112-139
28
1.4
ENST00000293761
4
ENSE00001061271
chr17:
4542267-4542145
123
LOX15_HUMAN
140-181
42
1
A:139-180
42
1.5
ENST00000293761
5
ENSE00001061269
chr17:
4541979-4541876
104
LOX15_HUMAN
181-216
36
1
A:180-215
36
1.6
ENST00000293761
6
ENSE00001618216
chr17:
4541672-4541512
161
LOX15_HUMAN
216-269
54
1
A:215-268
54
1.7
ENST00000293761
7
ENSE00001061261
chr17:
4540553-4540410
144
LOX15_HUMAN
270-317
48
1
A:269-316
48
1.8
ENST00000293761
8
ENSE00001061262
chr17:
4539263-4539054
210
LOX15_HUMAN
318-387
70
1
A:317-386
70
1.9
ENST00000293761
9
ENSE00001061264
chr17:
4536795-4536709
87
LOX15_HUMAN
388-416
29
1
A:387-415
29
1.10
ENST00000293761
10
ENSE00001061267
chr17:
4536610-4536441
170
LOX15_HUMAN
417-473
57
1
A:416-472
57
1.11
ENST00000293761
11
ENSE00001061270
chr17:
4536277-4536156
122
LOX15_HUMAN
473-514
42
1
A:472-513
42
1.12
ENST00000293761
12
ENSE00001651707
chr17:
4535576-4535476
101
LOX15_HUMAN
514-547
34
1
A:513-546
34
1.13
ENST00000293761
13
ENSE00001061266
chr17:
4535351-4535184
168
LOX15_HUMAN
548-603
56
1
A:547-602
56
1.14
ENST00000293761
14
ENSE00001243007
chr17:
4535074-4534214
861
LOX15_HUMAN
604-662
59
1
A:603-661
59
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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