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2ABJ
Biol. Unit 1
Info
Asym.Unit (269 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BRANCHED CHAIN AMINO ACID TRANSAMINASE IN A COMPLEX WITH AN INHIBITOR, C16H10N2O4F3SCL, AND PYRIDOXAL 5' PHOSPHATE.
Authors
:
J. F. Ohren, D. W. Moreland, J. R. Rubin, H. L. Hu, P. C. Mcconnell, A. Mist W. T. Mueller, J. D. Scholten, C. H. Hasemann
Date
:
15 Jul 05 (Deposition) - 27 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,D,G,J
Biol. Unit 1: A,D (1x)
Biol. Unit 2: G,J (1x)
Keywords
:
Branched-Chain-Amino-Acid Aminotransferase, Cytosolic, Pyridoxal- Phosphate-Dependent Aminotransferase, Plp-Lys220 Schiff Base, Inhibitor-Bound, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Y. Hu, P. A. Boxer, S. R. Kesten, H. J. Lei, D. J. Wustrow, D. W. Moreland, L. Zhang, K. Ahn, T. R. Ryder, X. Liu, J. R. Rubin, K. Fahnoe, R. T. Carroll, S. Dutta, D. C. Fahnoe, A. W. Probert, R. L. Roof, M. F. Rafferty, C. R. Kostlan, J. D. Scholten, M. Hood, X. D. Ren, G. P. Schielke, T. Z. Su, C. P. Taylor, A. Mistry, P. Mcconnell C. Hasemann, J. Ohren
The Design And Synthesis Of Human Branched-Chain Amino Acid Aminotransferase Inhibitors For Treatment Of Neurodegenerative Diseases.
Bioorg. Med. Chem. Lett. V. 16 2337 2006
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: N'-(5-CHLOROBENZOFURAN-2-CARBONYL)... (CBCa)
1b: N'-(5-CHLOROBENZOFURAN-2-CARBONYL)... (CBCb)
1c: N'-(5-CHLOROBENZOFURAN-2-CARBONYL)... (CBCc)
1d: N'-(5-CHLOROBENZOFURAN-2-CARBONYL)... (CBCd)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CBC
2
Ligand/Ion
N'-(5-CHLOROBENZOFURAN-2-CARBONYL)-2-(TRIFLUOROMETHYL)BENZENESULFONOHYDRAZIDE
2
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:47 , PHE A:93 , TYR A:159 , TYR A:191 , LYS A:220 , GLN A:242 , THR A:258 , MET A:259 , GLY A:330 , THR A:331 , ALA A:332 , CYS A:333 , PLP A:420 , HOH A:1746
BINDING SITE FOR RESIDUE CBC A 1401
2
AC2
SOFTWARE
ARG A:117 , ARG A:210 , LYS A:220 , TYR A:225 , GLU A:255 , THR A:258 , ASN A:260 , LEU A:284 , GLY A:286 , VAL A:287 , THR A:288 , GLY A:330 , THR A:331 , CBC A:1401 , HOH A:1402 , HOH A:1403 , HOH A:1404
BINDING SITE FOR RESIDUE PLP A 420
3
AC3
SOFTWARE
VAL A:173 , PHE D:47 , PHE D:93 , TYR D:159 , LYS D:220 , GLN D:242 , THR D:258 , MET D:259 , GLY D:330 , ALA D:332 , CYS D:333 , PLP D:420 , HOH D:2454
BINDING SITE FOR RESIDUE CBC D 2401
4
AC4
SOFTWARE
ARG D:117 , ARG D:210 , LYS D:220 , TYR D:225 , GLU D:255 , THR D:258 , MET D:259 , ASN D:260 , LEU D:284 , GLY D:286 , VAL D:287 , THR D:288 , THR D:331 , CBC D:2401 , HOH D:2405 , HOH D:2408 , HOH D:2457
BINDING SITE FOR RESIDUE PLP D 420
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_047681 (T57M, chain A/D, )
2: VAR_019614 (E319K, chain A/D, )
3: VAR_047682 (S328S, chain A/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047681
T
59
M
BCAT1_HUMAN
Polymorphism
17374285
A/D
T
57
M
2
UniProt
VAR_019614
E
321
K
BCAT1_HUMAN
Polymorphism
7313020
A/D
E
319
K
3
UniProt
VAR_047682
G
330
S
BCAT1_HUMAN
Polymorphism
1057204
A/D
S
328
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_4 (A:255-289,D:255-289)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_4
PS00770
Aminotransferases class-IV signature.
BCAT1_HUMAN
257-291
2
A:255-289
D:255-289
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2abja_ (A:)
1b: SCOP_d2abjd_ (D:)
1c: SCOP_d2abjg_ (G:)
1d: SCOP_d2abjj_ (J:)
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(33)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2abja_
A:
1b
d2abjd_
D:
1c
d2abjg_
G:
1d
d2abjj_
J:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2abjG01 (G:21-190,G:372-384)
1b: CATH_2abjD01 (D:19-190,D:372-383)
1c: CATH_2abjA01 (A:19-194,A:372-384)
1d: CATH_2abjJ01 (J:19-194,J:372-384)
2a: CATH_2abjD02 (D:197-371)
2b: CATH_2abjG02 (G:197-371)
2c: CATH_2abjA02 (A:195-371)
2d: CATH_2abjJ02 (J:195-371)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Human (Homo sapiens)
(15)
1a
2abjG01
G:21-190,G:372-384
1b
2abjD01
D:19-190,D:372-383
1c
2abjA01
A:19-194,A:372-384
1d
2abjJ01
J:19-194,J:372-384
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Human (Homo sapiens)
(15)
2a
2abjD02
D:197-371
2b
2abjG02
G:197-371
2c
2abjA02
A:195-371
2d
2abjJ02
J:195-371
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (269 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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