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2AAZ
Biol. Unit 4
Info
Asym.Unit (3.1 MB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (116 KB)
Biol.Unit 3 (115 KB)
Biol.Unit 4 (114 KB)
Biol.Unit 5 (106 KB)
Biol.Unit 6 (106 KB)
Biol.Unit 7 (106 KB)
Biol.Unit 8 (105 KB)
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Models
(4 )
Title
:
CRYPTOCOCCUS NEOFORMANS THYMIDYLATE SYNTHASE COMPLEXED WITH SUBSTRATE AND AN ANTIFOLATE
Authors
:
J. S. Finer-Moore, A. C. Anderson, R. H. O'Neil, M. P. Costi, S. Ferrari, J. Krucinski, R. M. Stroud
Date
:
14 Jul 05 (Deposition) - 06 Dec 05 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (4 x)
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Methyl Transferase, Nucleotide Biosynthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Finer-Moore, A. C. Anderson, R. H. O'Neil, M. P. Costi, S. Ferrari J. Krucinski, R. M. Stroud
The Structure Of Cryptococcus Neoformans Thymidylate Synthase Suggests Strategies For Using Target Dynamics For Species-Specific Inhibition.
Acta Crystallogr. , Sect. D V. 61 1320 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3a)
1b: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3b)
1c: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3c)
1d: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3d)
1e: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3e)
1f: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3f)
1g: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3g)
1h: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3h)
2a: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPa)
2b: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPb)
2c: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPc)
2d: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPd)
2e: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPe)
2f: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPf)
2g: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPg)
2h: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPh)
2i: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPi)
2j: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPj)
2k: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPk)
2l: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPl)
2m: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPm)
2n: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPn)
2o: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPo)
2p: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CB3
2
Ligand/Ion
10-PROPARGYL-5,8-DIDEAZAFOLIC ACID
2
UMP
2
Ligand/Ion
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: BC6 (SOFTWARE)
6: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
PHE A:72 , GLU A:79 , ILE A:100 , TRP A:101 , ASN A:104 , ASP A:219 , LEU A:222 , GLY A:223 , PHE A:226 , ASN A:227 , TYR A:259 , MET A:315 , SER A:316 , UMP A:350 , HOH A:571 , HOH A:574 , HOH A:657 , HOH A:776 , HOH A:876 , HOH A:979 , HOH A:1400 , HOH A:1598 , ARG H:70 , LYS H:310
BINDING SITE FOR RESIDUE CB3 A 2351
2
AC4
SOFTWARE
PHE B:72 , GLU B:79 , ILE B:100 , TRP B:101 , ASN B:104 , ASP B:219 , LEU B:222 , GLY B:223 , PHE B:226 , ASN B:227 , TYR B:259 , MET B:315 , SER B:316 , UMP B:400 , HOH B:545 , HOH B:632 , HOH B:681 , HOH B:993 , HOH B:994 , HOH B:1079 , HOH B:1381 , ARG G:70 , LYS G:310
BINDING SITE FOR RESIDUE CB3 B 2401
3
BC4
SOFTWARE
ARG G:40 , CYS G:187 , HIS G:188 , GLN G:215 , ARG G:216 , SER G:217 , ASP G:219 , ASN G:227 , HIS G:257 , TYR G:259 , HOH G:423 , HOH G:1150 , CB3 G:2651 , ARG H:167 , ARG H:168
BINDING SITE FOR RESIDUE UMP G 650
4
BC5
SOFTWARE
ARG B:70 , LYS B:310 , PHE G:72 , GLU G:79 , ILE G:100 , TRP G:101 , ASN G:104 , ASP G:219 , LEU G:222 , GLY G:223 , PHE G:226 , ASN G:227 , TYR G:259 , MET G:315 , SER G:316 , HOH G:451 , HOH G:452 , HOH G:499 , HOH G:502 , UMP G:650 , HOH G:1151 , HOH G:1342 , HOH G:1343
BINDING SITE FOR RESIDUE CB3 G 2651
5
BC6
SOFTWARE
ARG G:167 , ARG G:168 , ARG H:40 , CYS H:187 , HIS H:188 , GLN H:215 , ARG H:216 , SER H:217 , ASP H:219 , ASN H:227 , HIS H:257 , TYR H:259 , HOH H:477 , HOH H:1044 , CB3 H:2701
BINDING SITE FOR RESIDUE UMP H 700
6
BC7
SOFTWARE
ARG A:70 , LYS A:310 , PHE H:72 , GLU H:79 , ILE H:100 , TRP H:101 , ASN H:104 , LEU H:184 , ASP H:219 , LEU H:222 , GLY H:223 , PHE H:226 , ASN H:227 , TYR H:259 , MET H:315 , SER H:316 , HOH H:409 , HOH H:479 , UMP H:700 , HOH H:1236 , HOH H:1367 , HOH H:1371 , HOH H:1372 , HOH H:1376 , HOH H:1439
BINDING SITE FOR RESIDUE CB3 H 2701
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: THYMIDYLATE_SYNTHASE (G:167-195,H:167-195)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THYMIDYLATE_SYNTHASE
PS00091
Thymidylate synthase active site.
TYSY_CRYNB
167-195
2
-
-
-
-
-
-
G:167-195
H:167-195
-
-
-
-
-
-
-
-
TYSY_CRYNJ
167-195
2
-
-
-
-
-
-
G:167-195
H:167-195
-
-
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d2aaza_ (A:)
1b: SCOP_d2aazb_ (B:)
1c: SCOP_d2aazk_ (K:)
1d: SCOP_d2aazl_ (L:)
1e: SCOP_d2aazm_ (M:)
1f: SCOP_d2aazn_ (N:)
1g: SCOP_d2aazo_ (O:)
1h: SCOP_d2aazp_ (P:)
1i: SCOP_d2aazc_ (C:)
1j: SCOP_d2aazd_ (D:)
1k: SCOP_d2aaze_ (E:)
1l: SCOP_d2aazf_ (F:)
1m: SCOP_d2aazg_ (G:)
1n: SCOP_d2aazh_ (H:)
1o: SCOP_d2aazi_ (I:)
1p: SCOP_d2aazj_ (J:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Superfamily
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Family
:
Thymidylate synthase/dCMP hydroxymethylase
(183)
Protein domain
:
automated matches
(38)
Fungus (Filobasidiella neoformans) [TaxId: 5207]
(1)
1a
d2aaza_
A:
1b
d2aazb_
B:
1c
d2aazk_
K:
1d
d2aazl_
L:
1e
d2aazm_
M:
1f
d2aazn_
N:
1g
d2aazo_
O:
1h
d2aazp_
P:
1i
d2aazc_
C:
1j
d2aazd_
D:
1k
d2aaze_
E:
1l
d2aazf_
F:
1m
d2aazg_
G:
1n
d2aazh_
H:
1o
d2aazi_
I:
1p
d2aazj_
J:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_2aazI00 (I:16-317)
1b: CATH_2aazJ00 (J:16-317)
1c: CATH_2aazC00 (C:13-317)
1d: CATH_2aazD00 (D:13-317)
1e: CATH_2aazE00 (E:13-317)
1f: CATH_2aazF00 (F:13-317)
1g: CATH_2aazG00 (G:13-317)
1h: CATH_2aazH00 (H:13-317)
1i: CATH_2aazK00 (K:16-317)
1j: CATH_2aazL00 (L:16-317)
1k: CATH_2aazM00 (M:16-317)
1l: CATH_2aazN00 (N:16-317)
1m: CATH_2aazO00 (O:16-317)
1n: CATH_2aazP00 (P:16-317)
1o: CATH_2aazA00 (A:13-317)
1p: CATH_2aazB00 (B:13-317)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Thymidylate Synthase; Chain A
(160)
Homologous Superfamily
:
Thymidylate Synthase, chain A
(160)
Filobasidiella neoformans. Organism_taxid: 5207.
(1)
1a
2aazI00
I:16-317
1b
2aazJ00
J:16-317
1c
2aazC00
C:13-317
1d
2aazD00
D:13-317
1e
2aazE00
E:13-317
1f
2aazF00
F:13-317
1g
2aazG00
G:13-317
1h
2aazH00
H:13-317
1i
2aazK00
K:16-317
1j
2aazL00
L:16-317
1k
2aazM00
M:16-317
1l
2aazN00
N:16-317
1m
2aazO00
O:16-317
1n
2aazP00
P:16-317
1o
2aazA00
A:13-317
1p
2aazB00
B:13-317
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (3.1 MB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (116 KB)
Header - Biol.Unit 2
Biol.Unit 3 (115 KB)
Header - Biol.Unit 3
Biol.Unit 4 (114 KB)
Header - Biol.Unit 4
Biol.Unit 5 (106 KB)
Header - Biol.Unit 5
Biol.Unit 6 (106 KB)
Header - Biol.Unit 6
Biol.Unit 7 (106 KB)
Header - Biol.Unit 7
Biol.Unit 8 (105 KB)
Header - Biol.Unit 8
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