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2AAQ
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE HUMAN GLUTAHIONE REDUCTASE, COMPLEXED WITH GOPI
Authors
:
S. Urig, K. Fritz-Wolf, R. Reau, C. Herold-Mende, K. Toth, E. Davioud-C K. Becker
Date
:
14 Jul 05 (Deposition) - 04 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Disulfide Reductase, Homodimer, Antioxidative System, Glutathione Reduction, Gold-Coordination, Protein Gold Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Urig, K. Fritz-Wolf, R. Reau, C. Herold-Mende, K. Toth, E. Davioud-Charvet, K. Becker
Undressing Of Phosphine Gold(I) Complexes As Irreversible Inhibitors Of Human Disulfide Reductases.
Angew. Chem. Int. Ed. Engl. V. 45 1881 2006
[
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Hetero Components
(7, 14)
Info
All Hetero Components
2a: 2-(2-PHENYL-3-PYRIDIN-2-YL-4,5,6,7... (AUPa)
1a: GOLD ION (AUa)
1b: GOLD ION (AUb)
3a: CHLORIDE ION (CLa)
4a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
6a: POTASSIUM ION (Ka)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AU
2
Ligand/Ion
GOLD ION
2
AUP
1
Ligand/Ion
2-(2-PHENYL-3-PYRIDIN-2-YL-4,5,6,7-TETRAHYDRO-2H-ISOPHOSPHINDOL-1-YL)PYRIDINE
3
CL
1
Ligand/Ion
CHLORIDE ION
4
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
5
GOL
4
Ligand/Ion
GLYCEROL
6
K
1
Ligand/Ion
POTASSIUM ION
7
PO4
4
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:218 , HIS A:219 , HOH A:883 , HOH A:931
BINDING SITE FOR RESIDUE PO4 A 501
02
AC2
SOFTWARE
ALA A:195 , ARG A:218 , HIS A:219 , ARG A:224 , HOH A:835 , HOH A:839 , HOH A:877
BINDING SITE FOR RESIDUE PO4 A 503
03
AC3
SOFTWARE
CYS A:58 , VAL A:59 , CYS A:63 , VAL A:64 , HIS A:467 , AU A:603 , K A:701 , GOL A:806
BINDING SITE FOR RESIDUE PO4 A 504
04
AC4
SOFTWARE
HIS A:75 , SER A:76 , MET A:79 , ASP A:81 , HIS A:82 , TYR A:85 , PHE A:87
BINDING SITE FOR RESIDUE PO4 A 502
05
AC5
SOFTWARE
LYS A:53 , LEU A:54 , HOH A:946
BINDING SITE FOR RESIDUE CL A 700
06
AC6
SOFTWARE
CYS A:58 , PO4 A:504 , GOL A:806
BINDING SITE FOR RESIDUE K A 701
07
AC7
SOFTWARE
GLY A:27 , GLY A:29 , SER A:30 , GLY A:31 , VAL A:49 , GLU A:50 , SER A:51 , LYS A:53 , GLY A:56 , THR A:57 , CYS A:58 , VAL A:61 , CYS A:63 , LYS A:66 , HIS A:129 , ALA A:130 , ALA A:155 , THR A:156 , GLY A:157 , SER A:177 , PHE A:181 , ARG A:291 , ASP A:331 , LEU A:337 , LEU A:338 , THR A:339 , PRO A:340 , HIS A:467 , PRO A:468 , AU A:603 , HOH A:812 , HOH A:814 , HOH A:819 , HOH A:834 , HOH A:848
BINDING SITE FOR RESIDUE FAD A 499
08
AC8
SOFTWARE
LEU A:173 , ILE A:175 , GLY A:179 , GLN A:182 , LEU A:261 , ASP A:283 , CYS A:284 , AU A:602
BINDING SITE FOR RESIDUE AUP A 601
09
AC9
SOFTWARE
CYS A:284 , AUP A:601
BINDING SITE FOR RESIDUE AU A 602
10
BC1
SOFTWARE
CYS A:58 , CYS A:63 , THR A:339 , FAD A:499 , PO4 A:504
BINDING SITE FOR RESIDUE AU A 603
11
BC2
SOFTWARE
GLY A:196 , TYR A:197 , ILE A:198 , HOH A:877 , HOH A:878 , HOH A:945
BINDING SITE FOR RESIDUE GOL A 804
12
BC3
SOFTWARE
GLN A:319 , GLY A:330 , CYS A:333 , GLY A:334 , LYS A:335 , TYR A:364
BINDING SITE FOR RESIDUE GOL A 805
13
BC4
SOFTWARE
HIS A:467 , PO4 A:504 , K A:701 , HOH A:926
BINDING SITE FOR RESIDUE GOL A 806
14
BC5
SOFTWARE
ARG A:347
BINDING SITE FOR RESIDUE GOL A 807
[
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]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019079 (R109C, chain A, )
2: VAR_051775 (G188R, chain A, )
3: VAR_019080 (G188S, chain A, )
4: VAR_019081 (I217V, chain A, )
5: VAR_019082 (E253D, chain A, )
6: VAR_014554 (P270H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019079
R
153
C
GSHR_HUMAN
Polymorphism
8190955
A
R
109
C
2
UniProt
VAR_051775
G
232
R
GSHR_HUMAN
Polymorphism
8190976
A
G
188
R
3
UniProt
VAR_019080
G
232
S
GSHR_HUMAN
Polymorphism
8190976
A
G
188
S
4
UniProt
VAR_019081
I
261
V
GSHR_HUMAN
Polymorphism
8190997
A
I
217
V
5
UniProt
VAR_019082
E
297
D
GSHR_HUMAN
Polymorphism
8191004
A
E
253
D
6
UniProt
VAR_014554
P
314
H
GSHR_HUMAN
Polymorphism
2020916
A
P
270
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:55-65)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
GSHR_HUMAN
99-109
1
A:55-65
[
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]
Exons
(13, 13)
Info
All Exons
Exon 1.1a (A:18-58)
Exon 1.3 (A:59-67)
Exon 1.4 (A:68-97)
Exon 1.5 (A:97-120)
Exon 1.6 (A:121-170)
Exon 1.7 (A:170-188)
Exon 1.8b (A:188-221)
Exon 1.9 (A:222-250)
Exon 1.10b (A:251-303)
Exon 1.11 (A:304-341)
Exon 1.12b (A:341-385)
Exon 1.13 (A:385-429)
Exon 1.14b (A:430-478)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8b
08: Boundary 1.8b/1.9
09: Boundary 1.9/1.10b
10: Boundary 1.10b/1.11
11: Boundary 1.11/1.12b
12: Boundary 1.12b/1.13
13: Boundary 1.13/1.14b
14: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000221130
1a
ENSE00001167123
chr8:
30585443-30585047
397
GSHR_HUMAN
1-102
102
1
A:18-58
41
1.3
ENST00000221130
3
ENSE00001158437
chr8:
30569605-30569579
27
GSHR_HUMAN
103-111
9
1
A:59-67
9
1.4
ENST00000221130
4
ENSE00001158427
chr8:
30567419-30567331
89
GSHR_HUMAN
112-141
30
1
A:68-97
30
1.5
ENST00000221130
5
ENSE00001158417
chr8:
30565658-30565589
70
GSHR_HUMAN
141-164
24
1
A:97-120
24
1.6
ENST00000221130
6
ENSE00001158408
chr8:
30560757-30560610
148
GSHR_HUMAN
165-214
50
1
A:121-170
50
1.7
ENST00000221130
7
ENSE00000687921
chr8:
30557652-30557598
55
GSHR_HUMAN
214-232
19
1
A:170-188
19
1.8b
ENST00000221130
8b
ENSE00000687915
chr8:
30553996-30553897
100
GSHR_HUMAN
232-265
34
1
A:188-221
34
1.9
ENST00000221130
9
ENSE00000687910
chr8:
30550572-30550486
87
GSHR_HUMAN
266-294
29
1
A:222-250
29
1.10b
ENST00000221130
10b
ENSE00000687906
chr8:
30546836-30546678
159
GSHR_HUMAN
295-347
53
1
A:251-303
53
1.11
ENST00000221130
11
ENSE00000687902
chr8:
30541716-30541605
112
GSHR_HUMAN
348-385
38
1
A:304-341
38
1.12b
ENST00000221130
12b
ENSE00000687899
chr8:
30539578-30539447
132
GSHR_HUMAN
385-429
45
1
A:341-385
45
1.13
ENST00000221130
13
ENSE00000687897
chr8:
30538554-30538421
134
GSHR_HUMAN
429-473
45
1
A:385-429
45
1.14b
ENST00000221130
14b
ENSE00002132314
chr8:
30537186-30535583
1604
GSHR_HUMAN
474-522
49
1
A:430-478
49
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2aaqA03 (A:366-478)
2a: CATH_2aaqA01 (A:18-160,A:290-365)
2b: CATH_2aaqA02 (A:161-289)
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(
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Human (Homo sapiens)
(26)
1a
2aaqA03
A:366-478
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Human (Homo sapiens)
(57)
2a
2aaqA01
A:18-160,A:290-365
2b
2aaqA02
A:161-289
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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