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2AA3
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PLASMODIUM VIVAX LACTATE DEHYDROGENASE COMPLEX WITH APADH
Authors
:
A. Chaikuad, V. Fairweather, R. Conners, T. Joseph-Horne, D. Turgut- Balik, R. L. Brady
Date
:
13 Jul 05 (Deposition) - 10 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, V. Fairweather, R. Conners, T. Joseph-Horne, D. Turgut-Balik, R. L. Brady
Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complexes With Nadh And Apadh.
Biochemistry V. 44 16221 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ACETYL PYRIDINE ADENINE DINUCLEOTI... (AP0a)
1b: ACETYL PYRIDINE ADENINE DINUCLEOTI... (AP0b)
1c: ACETYL PYRIDINE ADENINE DINUCLEOTI... (AP0c)
1d: ACETYL PYRIDINE ADENINE DINUCLEOTI... (AP0d)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AP0
4
Ligand/Ion
ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:308 , ALA A:309 , HOH A:1477 , LYS C:314
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
ARG B:204 , ASN C:308 , ALA C:309 , GLU C:310
BINDING SITE FOR RESIDUE SO4 C 1002
3
AC3
SOFTWARE
GLY A:29 , MET A:30 , ILE A:31 , PHE A:52 , ASP A:53 , VAL A:54 , VAL A:55 , TYR A:85 , THR A:97 , ALA A:98 , GLY A:99 , ILE A:119 , VAL A:138 , ASN A:140 , VAL A:142 , LEU A:163 , LEU A:167 , HIS A:195 , HOH A:1436 , HOH A:1456 , HOH A:1462 , HOH A:1535 , HOH A:1536 , HOH A:1537
BINDING SITE FOR RESIDUE AP0 A 1401
4
AC4
SOFTWARE
GLY D:29 , MET D:30 , ILE D:31 , PHE D:52 , ASP D:53 , VAL D:54 , VAL D:55 , TYR D:85 , THR D:97 , ALA D:98 , GLY D:99 , VAL D:138 , ASN D:140 , LEU D:163 , LEU D:167 , HIS D:195 , HOH D:1416 , HOH D:1448 , HOH D:1486
BINDING SITE FOR RESIDUE AP0 D 1403
5
AC5
SOFTWARE
GLY C:29 , MET C:30 , ILE C:31 , PHE C:52 , ASP C:53 , VAL C:54 , VAL C:55 , MET C:58 , TYR C:85 , THR C:97 , ALA C:98 , GLY C:99 , PHE C:100 , ILE C:119 , VAL C:138 , ASN C:140 , LEU C:163 , LEU C:167 , HIS C:195 , HOH C:1419 , HOH C:1423 , HOH C:1498 , HOH C:1517 , HOH C:1521
BINDING SITE FOR RESIDUE AP0 C 1405
6
AC6
SOFTWARE
GLY B:29 , MET B:30 , ILE B:31 , PHE B:52 , ASP B:53 , VAL B:54 , VAL B:55 , TYR B:85 , THR B:97 , ALA B:98 , GLY B:99 , GLU B:122 , VAL B:138 , THR B:139 , ASN B:140 , VAL B:142 , LEU B:163 , LEU B:167 , HIS B:195 , HOH B:1461 , HOH B:1520 , HOH B:1521
BINDING SITE FOR RESIDUE AP0 B 1407
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2aa3a2 (A:164-330)
1b: SCOP_d2aa3b2 (B:164-329)
1c: SCOP_d2aa3c2 (C:164-332)
1d: SCOP_d2aa3d2 (D:164-329)
2a: SCOP_d2aa3a1 (A:18-163)
2b: SCOP_d2aa3b1 (B:18-163)
2c: SCOP_d2aa3c1 (C:18-163)
2d: SCOP_d2aa3d1 (D:18-163)
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Classes
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)
(
)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Lactate dehydrogenase
(55)
Plasmodium vivax [TaxId: 5855]
(2)
1a
d2aa3a2
A:164-330
1b
d2aa3b2
B:164-329
1c
d2aa3c2
C:164-332
1d
d2aa3d2
D:164-329
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Lactate dehydrogenase
(53)
Plasmodium vivax [TaxId: 5855]
(2)
2a
d2aa3a1
A:18-163
2b
d2aa3b1
B:18-163
2c
d2aa3c1
C:18-163
2d
d2aa3d1
D:18-163
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2aa3A01 (A:18-162)
1b: CATH_2aa3B01 (B:18-162)
1c: CATH_2aa3C01 (C:18-162)
1d: CATH_2aa3D01 (D:18-162)
2a: CATH_2aa3B02 (B:163-329)
2b: CATH_2aa3D02 (D:163-329)
2c: CATH_2aa3A02 (A:163-330)
2d: CATH_2aa3C02 (C:163-332)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Malaria parasite p (Plasmodium vivax)
(2)
1a
2aa3A01
A:18-162
1b
2aa3B01
B:18-162
1c
2aa3C01
C:18-162
1d
2aa3D01
D:18-162
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Malaria parasite p (Plasmodium vivax)
(2)
2a
2aa3B02
B:163-329
2b
2aa3D02
D:163-329
2c
2aa3A02
A:163-330
2d
2aa3C02
C:163-332
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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