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2A9W
Asym. Unit
Info
Asym.Unit (208 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
E. COLI TS COMPLEXED WITH DUMP AND INHIBITOR GA9
Authors
:
J. S. Finer-Moore, A. C. Anderson, R. H. O'Neil, M. P. Costi, S. Ferrari, J. Krucinski, R. M. Stroud
Date
:
12 Jul 05 (Deposition) - 11 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protein-Inhibitor Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Finer-Moore, A. C. Anderson, R. H. O'Neil, M. P. Costi, S. Ferrari J. Krucinski, R. M. Stroud
The Structure Of Cryptococcus Neoformans Thymidylate Synthase Suggests Strategies For Using Target Dynamics For Species-Specific Inhibition.
Acta Crystallogr. , Sect. D V. 61 1320 2005
[
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Hetero Components
(7, 39)
Info
All Hetero Components
1a: 2-BROMOPHENOL (2BRa)
2a: BETA-MERCAPTOETHANOL (BMEa)
2b: BETA-MERCAPTOETHANOL (BMEb)
2c: BETA-MERCAPTOETHANOL (BMEc)
2d: BETA-MERCAPTOETHANOL (BMEd)
3a: N-CARBOXYMETHIONINE (CXMa)
3b: N-CARBOXYMETHIONINE (CXMb)
3c: N-CARBOXYMETHIONINE (CXMc)
3d: N-CARBOXYMETHIONINE (CXMd)
4a: 3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7... (GA9a)
4b: 3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7... (GA9b)
4c: 3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7... (GA9c)
4d: 3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7... (GA9d)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
6c: PHOSPHATE ION (PO4c)
6d: PHOSPHATE ION (PO4d)
6e: PHOSPHATE ION (PO4e)
6f: PHOSPHATE ION (PO4f)
6g: PHOSPHATE ION (PO4g)
6h: PHOSPHATE ION (PO4h)
6i: PHOSPHATE ION (PO4i)
6j: PHOSPHATE ION (PO4j)
6k: PHOSPHATE ION (PO4k)
6l: PHOSPHATE ION (PO4l)
7a: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPa)
7b: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPb)
7c: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPc)
7d: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2BR
1
Ligand/Ion
2-BROMOPHENOL
2
BME
4
Ligand/Ion
BETA-MERCAPTOETHANOL
3
CXM
4
Mod. Amino Acid
N-CARBOXYMETHIONINE
4
GA9
4
Ligand/Ion
3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7-CHLORO-1H,3H-BENZO[DE]ISOCHROMEN-1-ONE
5
GOL
10
Ligand/Ion
GLYCEROL
6
PO4
12
Ligand/Ion
PHOSPHATE ION
7
UMP
4
Ligand/Ion
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:21 , ARG A:166 , UMP A:1277 , HOH A:1936 , ARG B:126 , ARG B:127
BINDING SITE FOR RESIDUE PO4 A 1266
02
AC2
SOFTWARE
GLU A:223 , ARG A:225 , HIS A:255 , HOH A:1919
BINDING SITE FOR RESIDUE PO4 A 1270
03
AC3
SOFTWARE
ARG A:126 , ARG A:127 , ARG B:21 , ARG B:166 , UMP B:1278 , HOH B:1927
BINDING SITE FOR RESIDUE PO4 B 1265
04
AC4
SOFTWARE
GLU B:223 , ARG B:225 , HIS B:255
BINDING SITE FOR RESIDUE PO4 B 1269
05
AC5
SOFTWARE
GLN B:215 , LYS B:259 , PRO B:261 , GOL B:1801 , GLN D:64 , ARG D:99
BINDING SITE FOR RESIDUE PO4 B 1273
06
AC6
SOFTWARE
LEU B:218 , ARG B:222
BINDING SITE FOR RESIDUE PO4 B 1275
07
AC7
SOFTWARE
ARG C:21 , ARG C:166 , UMP C:1279 , HOH C:1935 , ARG D:126 , ARG D:127
BINDING SITE FOR RESIDUE PO4 C 1267
08
AC8
SOFTWARE
GLU C:223 , ARG C:225 , HIS C:255 , HOH C:1919
BINDING SITE FOR RESIDUE PO4 C 1271
09
AC9
SOFTWARE
GLN B:64 , GLY B:65 , ARG B:99 , GLN C:215 , GOL C:1806
BINDING SITE FOR RESIDUE PO4 C 1274
10
BC1
SOFTWARE
ARG C:126 , ARG D:21 , ARG D:166 , UMP D:1280 , HOH D:1927
BINDING SITE FOR RESIDUE PO4 D 1268
11
BC2
SOFTWARE
GLU D:223 , ARG D:225 , HIS D:255
BINDING SITE FOR RESIDUE PO4 D 1272
12
BC3
SOFTWARE
GLN C:64 , ARG C:99 , GLN D:215 , PRO D:261 , GOL D:1805
BINDING SITE FOR RESIDUE PO4 D 1276
13
BC4
SOFTWARE
ARG A:21 , CYS A:146 , GLN A:165 , ARG A:166 , SER A:167 , CYS A:168 , ASP A:169 , ASN A:177 , HIS A:207 , TYR A:209 , PO4 A:1266 , HOH A:1935 , HOH A:1936 , HOH A:1942 , ARG B:126
BINDING SITE FOR RESIDUE UMP A 1277
14
BC5
SOFTWARE
SER A:54 , THR A:78 , ILE A:79 , GLY A:106 , HIS A:108 , LEU A:172 , GLY A:173 , PHE A:176 , ALA A:260 , VAL A:262 , GOL A:1804 , HOH A:1842 , HOH A:1885
BINDING SITE FOR RESIDUE GA9 A 1320
15
BC6
SOFTWARE
GLN A:165 , CYS A:168 , ASP A:169 , GLY A:173 , LEU A:174 , ASN A:177 , HOH A:1935
BINDING SITE FOR RESIDUE BME A 1815
16
BC7
SOFTWARE
ALA A:144 , CYS A:146 , ARG A:166
BINDING SITE FOR RESIDUE BME A 1817
17
BC8
SOFTWARE
ARG A:126 , CYS B:146 , GLN B:165 , ARG B:166 , SER B:167 , CYS B:168 , ASP B:169 , ASN B:177 , HIS B:207 , TYR B:209 , PO4 B:1265 , HOH B:1925 , HOH B:1927
BINDING SITE FOR RESIDUE UMP B 1278
18
BC9
SOFTWARE
SER B:54 , THR B:78 , ILE B:79 , LEU B:172 , PHE B:176 , ALA B:260 , VAL B:262 , GOL B:1802 , HOH B:1869 , GLY D:106 , HIS D:108
BINDING SITE FOR RESIDUE GA9 B 1321
19
CC1
SOFTWARE
ARG B:49 , CYS B:50 , HIS B:51 , LEU B:52 , ARG B:53 , HOH D:1872
BINDING SITE FOR RESIDUE 2BR B 1819
20
CC2
SOFTWARE
ARG C:21 , CYS C:146 , GLN C:165 , ARG C:166 , SER C:167 , CYS C:168 , ASP C:169 , ASN C:177 , HIS C:207 , TYR C:209 , PO4 C:1267 , GA9 C:1318 , HOH C:1824 , HOH C:1901 , HOH C:1935 , HOH C:1941 , ARG D:126
BINDING SITE FOR RESIDUE UMP C 1279
21
CC3
SOFTWARE
GLY B:106 , HIS B:108 , SER C:54 , ILE C:79 , LEU C:172 , PHE C:176 , ALA C:260 , VAL C:262 , UMP C:1279 , GOL C:1808 , HOH C:1835 , HOH C:1836
BINDING SITE FOR RESIDUE GA9 C 1318
22
CC4
SOFTWARE
CYS C:146 , GLN C:165 , SER C:167 , CYS C:168 , ASP C:169 , GLY C:173 , LEU C:174 , ASN C:177 , HOH C:1824
BINDING SITE FOR RESIDUE BME C 1816
23
CC5
SOFTWARE
ARG C:126 , CYS D:146 , GLN D:165 , ARG D:166 , SER D:167 , CYS D:168 , ASP D:169 , ASN D:177 , HIS D:207 , TYR D:209 , PO4 D:1268 , HOH D:1925 , HOH D:1927
BINDING SITE FOR RESIDUE UMP D 1280
24
CC6
SOFTWARE
GLY C:106 , HIS C:108 , SER D:54 , ILE D:79 , LEU D:172 , PHE D:176 , ALA D:260 , VAL D:262 , GOL D:1807 , HOH D:1841 , HOH D:1899
BINDING SITE FOR RESIDUE GA9 D 1319
25
CC7
SOFTWARE
CYS D:146 , SER D:167
BINDING SITE FOR RESIDUE BME D 1818
26
CC8
SOFTWARE
GLN A:64 , ARG A:99 , ASN A:211 , HIS A:212 , MET A:213 , ASP A:214 , GLN A:215
BINDING SITE FOR RESIDUE GOL A 1803
27
CC9
SOFTWARE
LYS A:48 , CYS A:50 , LEU A:172 , GA9 A:1320 , HOH A:1943
BINDING SITE FOR RESIDUE GOL A 1804
28
DC1
SOFTWARE
PHE A:244 , GLU A:248 , ILE A:249
BINDING SITE FOR RESIDUE GOL A 1810
29
DC2
SOFTWARE
ASN B:211 , HIS B:212 , MET B:213 , ASP B:214 , GLN B:215 , PO4 B:1273 , GLN D:64 , ARG D:99
BINDING SITE FOR RESIDUE GOL B 1801
30
DC3
SOFTWARE
LYS B:48 , CYS B:50 , PHE B:171 , LEU B:172 , GA9 B:1321
BINDING SITE FOR RESIDUE GOL B 1802
31
DC4
SOFTWARE
ILE B:56 , PHE B:244 , GLU B:248 , ILE B:249 , HOH B:1841 , HOH B:1922
BINDING SITE FOR RESIDUE GOL B 1809
32
DC5
SOFTWARE
GLN B:64 , ARG B:99 , ASN C:211 , HIS C:212 , MET C:213 , ASP C:214 , GLN C:215 , PO4 C:1274
BINDING SITE FOR RESIDUE GOL C 1806
33
DC6
SOFTWARE
LEU C:44 , CYS C:50 , HIS C:51 , ILE C:55 , PRO C:175 , PHE C:176 , GA9 C:1318
BINDING SITE FOR RESIDUE GOL C 1808
34
DC7
SOFTWARE
GLN C:64 , ARG C:99 , ASN D:211 , HIS D:212 , MET D:213 , ASP D:214 , GLN D:215 , PO4 D:1276
BINDING SITE FOR RESIDUE GOL D 1805
35
DC8
SOFTWARE
LYS D:48 , CYS D:50 , HIS D:51 , ILE D:55 , PRO D:175 , PHE D:176 , GA9 D:1319 , HOH D:1882
BINDING SITE FOR RESIDUE GOL D 1807
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: THYMIDYLATE_SYNTHASE (A:126-154,B:126-154,C:126-154,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THYMIDYLATE_SYNTHASE
PS00091
Thymidylate synthase active site.
TYSY_ECOLI
126-154
4
A:126-154
B:126-154
C:126-154
D:126-154
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2a9wa_ (A:)
1b: SCOP_d2a9wc_ (C:)
1c: SCOP_d2a9wd_ (D:)
1d: SCOP_d2a9wb_ (B:)
View:
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Classes
(
)
(
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(
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(
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(
)
(
)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Superfamily
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Family
:
Thymidylate synthase/dCMP hydroxymethylase
(183)
Protein domain
:
Thymidylate synthase
(137)
Escherichia coli [TaxId: 562]
(64)
1a
d2a9wa_
A:
1b
d2a9wc_
C:
1c
d2a9wd_
D:
1d
d2a9wb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2a9wA00 (A:2-264)
1b: CATH_2a9wD00 (D:2-264)
1c: CATH_2a9wB00 (B:2-264)
1d: CATH_2a9wC00 (C:2-264)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Thymidylate Synthase; Chain A
(160)
Homologous Superfamily
:
Thymidylate Synthase, chain A
(160)
Escherichia coli. Organism_taxid: 562.
(16)
1a
2a9wA00
A:2-264
1b
2a9wD00
D:2-264
1c
2a9wB00
B:2-264
1d
2a9wC00
C:2-264
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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