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2A9V
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE GMP SYNTHASE SUBUNIT A PROTEIN (TA0944M) FROM THERMOPLASMA ACIDOPHILUM AT 2.45 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
12 Jul 05 (Deposition) - 02 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.24
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ligase
(Keyword Search:
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of (Np_394403. 1) From Thermoplasma Acidophilum At 2. 45 A Resolution
To Be Published
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
4a: THIOCYANATE ION (SCNa)
4b: THIOCYANATE ION (SCNb)
4c: THIOCYANATE ION (SCNc)
4d: THIOCYANATE ION (SCNd)
4e: THIOCYANATE ION (SCNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
7
Ligand/Ion
GLYCEROL
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
SCN
5
Ligand/Ion
THIOCYANATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:17 , HOH B:546
BINDING SITE FOR RESIDUE CL B 501
02
AC2
SOFTWARE
LYS A:157 , HIS C:99
BINDING SITE FOR RESIDUE SCN A 201
03
AC3
SOFTWARE
SER B:146 , HOH B:518 , HIS D:111
BINDING SITE FOR RESIDUE SCN D 201
04
AC4
SOFTWARE
HIS B:111 , LEU B:142 , SER D:108 , SER D:145 , SER D:146 , ALA D:147 , HOH D:238
BINDING SITE FOR RESIDUE SCN B 502
05
AC5
SOFTWARE
LEU C:142 , LYS C:157
BINDING SITE FOR RESIDUE SCN C 201
06
AC6
SOFTWARE
HIS B:156 , LYS B:157 , THR B:158 , ARG B:159 , TYR B:162 , TRP C:13
BINDING SITE FOR RESIDUE SCN C 202
07
AC7
SOFTWARE
GLN B:12 , TRP B:13 , ASN C:114 , HIS C:156 , THR C:158 , ARG C:159 , TYR C:162 , HOH C:221
BINDING SITE FOR RESIDUE GOL C 203
08
AC8
SOFTWARE
VAL D:6 , ASP D:8 , GLN D:12 , HIS D:15 , GLU D:17 , TRP D:18 , SER D:49
BINDING SITE FOR RESIDUE GOL D 202
09
AC9
SOFTWARE
ASN A:114 , HIS A:156 , ARG A:159 , TYR A:162 , HOH A:256 , GLN D:12 , TRP D:13 , GOL D:204 , HOH D:215
BINDING SITE FOR RESIDUE GOL A 202
10
BC1
SOFTWARE
GLN A:12 , TRP A:13 , ASN D:114 , HIS D:156 , LYS D:157 , THR D:158 , ARG D:159 , TYR D:162
BINDING SITE FOR RESIDUE GOL D 203
11
BC2
SOFTWARE
GLY C:11 , GLN C:12 , THR C:14 , ARG C:16 , GLU C:17 , GLU C:169
BINDING SITE FOR RESIDUE GOL C 204
12
BC3
SOFTWARE
GLN B:150 , ILE D:134 , ASN D:135 , LEU D:136 , GLN D:150
BINDING SITE FOR RESIDUE GOL B 503
13
BC4
SOFTWARE
GLU A:113 , TYR A:155 , GOL A:202 , HOH A:205 , ARG D:16 , VAL D:170 , GLU D:171 , HIS D:172
BINDING SITE FOR RESIDUE GOL D 204
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2a9va1 (A:1-196)
1b: SCOP_d2a9vb_ (B:)
1c: SCOP_d2a9vc_ (C:)
1d: SCOP_d2a9vd_ (D:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
GMP synthase subunit A, GuaAA
(2)
Thermoplasma acidophilum [TaxId: 2303]
(1)
1a
d2a9va1
A:1-196
1b
d2a9vb_
B:
1c
d2a9vc_
C:
1d
d2a9vd_
D:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
Biol.Unit 4 (36 KB)
Header - Biol.Unit 4
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