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2A9D
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RECOMBINANT CHICKEN SULFITE OXIDASE WITH ARG AT RESIDUE 161
Authors
:
E. Karakas, H. L. Wilson, T. N. Graf, S. Xiang, S. Jaramillo-Busquets, K. V. Rajagopalan, C. Kisker
Date
:
11 Jul 05 (Deposition) - 02 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sulfite Oxidase; Molybdopterin; Molybdenum, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Karakas, H. L. Wilson, T. N. Graf, S. Xiang, S. Jaramillo-Busquets, K. V. Rajagopalan, C. Kisker
Structural Insights Into Sulfite Oxidase Deficiency
J. Biol. Chem. V. 280 33506 2005
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: MOLYBDENUM ATOM (MOa)
1b: MOLYBDENUM ATOM (MOb)
2a: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEa)
2b: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MO
2
Ligand/Ion
MOLYBDENUM ATOM
2
MTE
2
Ligand/Ion
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:138 , ARG A:190 , GLY A:201 , LEU A:202 , TRP A:204 , TYR A:322 , ARG A:450 , HOH A:7506 , HOH A:7583
BINDING SITE FOR RESIDUE SO4 A 7503
2
AC2
SOFTWARE
HIS A:140 , TRP A:317 , HOH A:7624 , HOH A:7682 , HOH A:7894 , ARG B:337
BINDING SITE FOR RESIDUE SO4 A 7504
3
AC3
SOFTWARE
ARG B:138 , ARG B:190 , GLY B:201 , LEU B:202 , TRP B:204 , TYR B:322 , ARG B:450 , HOH B:8506 , HOH B:8633
BINDING SITE FOR RESIDUE SO4 B 8503
4
AC4
SOFTWARE
ARG A:337 , HIS B:140 , TRP B:317 , HOH B:8575 , HOH B:8616
BINDING SITE FOR RESIDUE SO4 B 8504
5
AC5
SOFTWARE
PHE A:135 , PHE A:136 , THR A:137 , ARG A:138 , HIS A:140 , CYS A:185 , ASP A:244 , TYR A:252 , HIS A:283 , ARG A:288 , GLY A:296 , ALA A:297 , SER A:299 , VAL A:300 , LYS A:301 , TRP A:302 , TYR A:322 , MO A:2501
BINDING SITE FOR RESIDUE MTE A 1501
6
AC6
SOFTWARE
CYS A:185 , MTE A:1501 , HOH A:7505 , HOH A:7506
BINDING SITE FOR RESIDUE MO A 2501
7
AC7
SOFTWARE
PHE B:135 , PHE B:136 , THR B:137 , ARG B:138 , HIS B:140 , CYS B:185 , ASP B:244 , TYR B:252 , HIS B:283 , ARG B:288 , GLY B:296 , ALA B:297 , SER B:299 , VAL B:300 , LYS B:301 , TRP B:302 , TYR B:322 , MO B:5501 , HOH B:8506
BINDING SITE FOR RESIDUE MTE B 4501
8
AC8
SOFTWARE
CYS B:185 , MTE B:4501 , HOH B:8505 , HOH B:8506
BINDING SITE FOR RESIDUE MO B 5501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MOLYBDOPTERIN_EUK (A:157-192,B:157-192)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOLYBDOPTERIN_EUK
PS00559
Eukaryotic molybdopterin oxidoreductases signature.
SUOX_CHICK
157-192
2
A:157-192
B:157-192
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2a9da1 (A:344-466)
1b: SCOP_d2a9db2 (B:344-466)
2a: SCOP_d2a9da2 (A:95-343)
2b: SCOP_d2a9db1 (B:108-343)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Molybdenum-containing oxidoreductases-like dimerisation domain
(7)
Protein domain
:
Sulfite oxidase, C-terminal domain
(7)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
1a
d2a9da1
A:344-466
1b
d2a9db2
B:344-466
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Oxidoreductase molybdopterin-binding domain
(15)
Superfamily
:
Oxidoreductase molybdopterin-binding domain
(15)
Family
:
Oxidoreductase molybdopterin-binding domain
(9)
Protein domain
:
Sulfite oxidase, middle catalytic domain
(7)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
2a
d2a9da2
A:95-343
2b
d2a9db1
B:108-343
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2a9dA01 (A:95-343)
1b: CATH_2a9dB01 (B:108-343)
2a: CATH_2a9dA02 (A:344-466)
2b: CATH_2a9dB02 (B:344-466)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Sulfite Oxidase; Chain A, domain 2
(11)
Homologous Superfamily
:
Sulfite Oxidase; Chain A, domain 2
(11)
Chicken (Gallus gallus)
(6)
1a
2a9dA01
A:95-343
1b
2a9dB01
B:108-343
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.650, no name defined]
(9)
Chicken (Gallus gallus)
(6)
2a
2a9dA02
A:344-466
2b
2a9dB02
B:344-466
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (138 KB)
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