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2A97
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF CLOSTRIDIUM BOTULINUM NEUROTOXIN SEROTYPE F
Authors
:
R. Agarwal, T. Binz, S. Swaminathan
Date
:
11 Jul 05 (Deposition) - 20 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Clostridium Botulinum Neurotoxin Serotype F; Light Chain; Catalytic Domain; X-Ray; Crystal Structure; Zinc Endopeptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Agarwal, T. Binz, S. Swaminathan
Structural Analysis Of Botulinum Neurotoxin Serotype F Light Chain: Implications On Substrate Binding And Inhibitor Design
Biochemistry V. 44 11758 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CD
7
Ligand/Ion
CADMIUM ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: CDA (AUTHOR)
11: CDB (AUTHOR)
12: CDD (AUTHOR)
13: CDE (AUTHOR)
14: CDF (AUTHOR)
15: ZNA (AUTHOR)
16: ZNB (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:227 , HIS A:231 , GLU A:266 , HOH A:5595
BINDING SITE FOR RESIDUE ZN A 1437
02
AC2
SOFTWARE
HIS B:227 , HIS B:231 , GLU B:266 , HOH B:5596
BINDING SITE FOR RESIDUE ZN B 2437
03
AC3
SOFTWARE
ASP A:383 , HOH A:5510 , ASP B:383 , HOH B:5621
BINDING SITE FOR RESIDUE CD A 5500
04
AC4
SOFTWARE
ASP A:121 , HOH A:5574 , HOH A:5596 , HOH B:5583
BINDING SITE FOR RESIDUE CD A 5502
05
AC5
SOFTWARE
HOH B:5550 , HOH B:5582 , HOH B:5602
BINDING SITE FOR RESIDUE CD B 5503
06
AC6
SOFTWARE
GLU A:127
BINDING SITE FOR RESIDUE CD A 5504
07
AC7
SOFTWARE
ASP B:121 , HOH B:5622 , HOH B:5623 , HOH B:5624 , HOH B:5632
BINDING SITE FOR RESIDUE CD B 5505
08
AC8
SOFTWARE
GLU A:246 , HIS B:122 , HOH B:5506 , HOH B:5584
BINDING SITE FOR RESIDUE CD A 5506
09
AC9
SOFTWARE
HIS A:122 , GLU B:246 , HOH B:5611 , HOH B:5620
BINDING SITE FOR RESIDUE CD A 5507
10
CDA
AUTHOR
HOH B:5582 , HOH B:5550 , HOH B:5602
FIRST CADMIUM BINDING SITE
11
CDB
AUTHOR
ASP B:121 , HOH B:5588 , HOH B:5584 , HOH B:5509
SECOND CADMIUM BINDING SITE
12
CDD
AUTHOR
ASP A:121
FOURT CADMIUM BINDING SITE
13
CDE
AUTHOR
ASP A:383
FIFTH CADMIUM BINDING SITE
14
CDF
AUTHOR
HIS A:122
SIXTH CADMIUM BINDING SITE
15
ZNA
AUTHOR
HIS A:227 , HIS A:231 , GLU A:266 , HOH A:5595
FIRST ZINC BINDING SITE
16
ZNB
AUTHOR
HIS B:227 , HIS B:231 , GLU B:266 , HOH B:5596
SECOND ZINC BINDING SITE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:224-233,B:224-233)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
BXF_CLOBO
224-233
2
A:224-233
B:224-233
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2a97a_ (A:)
1b: SCOP_d2a97b_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Clostridium neurotoxins, catalytic domain
(65)
Protein domain
:
automated matches
(23)
Clostridium botulinum [TaxId: 1491]
(19)
1a
d2a97a_
A:
1b
d2a97b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2a97A00 (A:2-415)
1b: CATH_2a97B00 (B:2-415)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Zincin-like
(46)
Homologous Superfamily
:
Metalloproteases ('zincins'), catalytic domain like
(46)
Clostridium botulinum. Organism_taxid: 1491. Strain: nctc 10821.
(2)
1a
2a97A00
A:2-415
1b
2a97B00
B:2-415
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
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