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2A89
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
MONOMERIC SARCOSINE OXIDASE: STRUCTURE OF A COVALENTLY FLAVINYLATED AMINE OXIDIZING ENZYME
Authors
:
Z. -W. Chen, G. Zhao, S. Martinovic, M. S. Jorns, F. S. Mathews
Date
:
07 Jul 05 (Deposition) - 17 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Flavoprotein, Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. -W. Chen, G. Zhao, S. Martinovic, M. S. Jorns, F. S. Mathews
Structure Of The Sodium Borohydride-Reduced N-(Cyclopropyl)Glycine Adduct Of The Flavoenzyme Monomeric Sarcosine Oxidase.
Biochemistry V. 44 15444 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: (N5,C4A)-(ALPHA-HYDROXY-PROPANO)-3... (FCGa)
2b: (N5,C4A)-(ALPHA-HYDROXY-PROPANO)-3... (FCGb)
3a: PHOSPHATE ION (PO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
FCG
2
Ligand/Ion
(N5,C4A)-(ALPHA-HYDROXY-PROPANO)-3,4,4A,5-TETRAHYDRO-FLAVIN-ADENINE DINUCLEOTIDE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:53 , LEU B:113 , THR B:114 , GLU B:141 , PRO B:142 , ASN B:143 , SER B:144 , HOH B:2477 , HOH B:2782
BINDING SITE FOR RESIDUE PO4 B 1401
2
AC2
SOFTWARE
TYR A:317 , THR A:318 , GLY A:344 , FCG A:1400
BINDING SITE FOR RESIDUE CL A 1402
3
AC3
SOFTWARE
ASN A:293 , HOH A:1420 , HOH A:1481 , ASN B:293 , HOH B:2425 , HOH B:2433 , HOH B:2729
BINDING SITE FOR RESIDUE CL A 1403
4
AC4
SOFTWARE
TYR B:317 , THR B:318 , SER B:343 , GLY B:344 , FCG B:2400 , HOH B:2413
BINDING SITE FOR RESIDUE CL B 2402
5
AC5
SOFTWARE
GLY A:10 , GLY A:12 , SER A:13 , MET A:14 , VAL A:32 , ASP A:33 , ALA A:34 , PHE A:35 , HIS A:39 , GLY A:42 , SER A:43 , HIS A:44 , ARG A:49 , ILE A:50 , ARG A:172 , VAL A:173 , SER A:200 , MET A:201 , GLY A:202 , TRP A:204 , LEU A:208 , VAL A:225 , TYR A:254 , PHE A:256 , CYS A:315 , MET A:316 , TYR A:317 , PHE A:342 , GLY A:344 , HIS A:345 , GLY A:346 , PHE A:347 , LYS A:348 , CL A:1402 , HOH A:1422 , HOH A:1431 , HOH A:1440 , HOH A:1458 , HOH A:1542 , HOH A:1636
BINDING SITE FOR RESIDUE FCG A 1400
6
AC6
SOFTWARE
GLY B:10 , GLY B:12 , SER B:13 , MET B:14 , VAL B:32 , ASP B:33 , ALA B:34 , PHE B:35 , HIS B:39 , GLY B:42 , SER B:43 , HIS B:44 , ARG B:49 , ILE B:50 , THR B:171 , ARG B:172 , VAL B:173 , SER B:200 , MET B:201 , GLY B:202 , TRP B:204 , LEU B:208 , VAL B:225 , TYR B:254 , PHE B:256 , CYS B:315 , MET B:316 , TYR B:317 , PHE B:342 , GLY B:344 , HIS B:345 , GLY B:346 , PHE B:347 , LYS B:348 , CL B:2402 , HOH B:2403 , HOH B:2409 , HOH B:2411 , HOH B:2426 , HOH B:2466
BINDING SITE FOR RESIDUE FCG B 2400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2a89a2 (A:218-321)
1b: SCOP_d2a89b2 (B:218-321)
2a: SCOP_d2a89a1 (A:1-217,A:322-385)
2b: SCOP_d2a89b1 (B:1-217,B:322-385)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
1a
d2a89a2
A:218-321
1b
d2a89b2
B:218-321
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
2a
d2a89a1
A:1-217,A:322-385
2b
d2a89b1
B:1-217,B:322-385
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2a89A02 (A:60-145,A:213-321)
1b: CATH_2a89B02 (B:60-145,B:213-321)
2a: CATH_2a89A01 (A:1-59,A:149-212,A:326-385)
2b: CATH_2a89B01 (B:1-59,B:149-212,B:326-385)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
B-0618 (Bacillus sp)
(11)
1a
2a89A02
A:60-145,A:213-321
1b
2a89B02
B:60-145,B:213-321
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
B-0618 (Bacillus sp)
(11)
2a
2a89A01
A:1-59,A:149-212,A:326-385
2b
2a89B01
B:1-59,B:149-212,B:326-385
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (150 KB)
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