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2A86
Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE COMPLEXED WITH AMP AND BETA-ALANINE
Authors
:
S. Wang, D. Eisenberg, Tb Structural Genomics Consortium (Tbsgc)
Date
:
07 Jul 05 (Deposition) - 21 Feb 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Substrate Complex, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wang, D. Eisenberg
Crystal Structure Of The Pantothenate Synthetase From Mycobacterium Tuberculosis, Snapshots Of The Enzyme In Action.
Biochemistry V. 45 1554 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: BETA-ALANINE (BALa)
2b: BETA-ALANINE (BALb)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
3c: ETHANOL (EOHc)
3d: ETHANOL (EOHd)
3e: ETHANOL (EOHe)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
BAL
2
Ligand/Ion
BETA-ALANINE
3
EOH
5
Ligand/Ion
ETHANOL
4
GOL
5
Ligand/Ion
GLYCEROL
5
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:56 , PRO A:58 , ARG A:154
BINDING SITE FOR RESIDUE SO4 A 5001
02
AC2
SOFTWARE
PRO A:38 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , PHE A:157 , GLY A:158 , LYS A:160 , ASP A:161 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , BAL A:2001 , GOL A:3003 , HOH A:5010 , HOH A:5014 , HOH A:5047 , HOH A:5077 , HOH A:5100
BINDING SITE FOR RESIDUE AMP A 1001
03
AC3
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , LEU B:50 , PHE B:157 , GLY B:158 , ASP B:161 , PRO B:185 , THR B:186 , VAL B:187 , MET B:195 , GOL B:3001 , HOH B:4042 , HOH B:4098
BINDING SITE FOR RESIDUE AMP B 1002
04
AC4
SOFTWARE
MET A:40 , GLN A:72 , HIS A:135 , ASP A:161 , AMP A:1001 , GOL A:3003 , HOH A:5077
BINDING SITE FOR RESIDUE BAL A 2001
05
AC5
SOFTWARE
ALA A:21 , GLN A:148 , ASN B:176
BINDING SITE FOR RESIDUE BAL A 2002
06
AC6
SOFTWARE
GLN B:72 , VAL B:139 , VAL B:142 , GLN B:164 , AMP B:1002 , HOH B:4103
BINDING SITE FOR RESIDUE GOL B 3001
07
AC7
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 3002
08
AC8
SOFTWARE
GLN A:72 , VAL A:142 , GLN A:164 , AMP A:1001 , BAL A:2001 , HOH A:5003
BINDING SITE FOR RESIDUE GOL A 3003
09
AC9
SOFTWARE
PRO A:83 , ARG A:84 , ARG A:200 , TYR A:201
BINDING SITE FOR RESIDUE GOL A 3004
10
BC1
SOFTWARE
ARG A:115 , THR A:117 , GLN B:119 , PRO B:120 , GLY B:121
BINDING SITE FOR RESIDUE GOL A 3006
11
BC2
SOFTWARE
LYS B:160 , ASP B:161 , SER B:196
BINDING SITE FOR RESIDUE EOH B 4001
12
BC3
SOFTWARE
THR A:218 , HIS B:222 , THR B:225
BINDING SITE FOR RESIDUE EOH B 4002
13
BC4
SOFTWARE
GLY B:244 , ARG B:273 , GLY B:275
BINDING SITE FOR RESIDUE EOH B 4003
14
BC5
SOFTWARE
ARG A:151 , PRO A:152 , ASP A:178
BINDING SITE FOR RESIDUE EOH A 4004
15
BC6
SOFTWARE
ASN A:176
BINDING SITE FOR RESIDUE EOH A 4005
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2a86a_ (A:)
1b: SCOP_d2a86b_ (B:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d2a86a_
A:
1b
d2a86b_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2a86B02 (B:186-288)
1b: CATH_2a86A02 (A:186-290)
2a: CATH_2a86A01 (A:3-185)
2b: CATH_2a86B01 (B:2-185)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(19)
1a
2a86B02
B:186-288
1b
2a86A02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(20)
2a
2a86A01
A:3-185
2b
2a86B01
B:2-185
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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