PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2A7R
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (194 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GUANOSINE MONOPHOSPHATE REDUCTASE 2 (GMPR2)
Authors
:
J. Li, Z. Wei, M. Zheng, X. Gu, Y. Deng, R. Qiu, F. Chen, C. Ji, W. Gong, Y. Xie, Y. Mao
Date
:
05 Jul 05 (Deposition) - 31 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Li, Z. Wei, M. Zheng, X. Gu, Y. Deng, R. Qiu, F. Chen, C. Ji, W. Gong, Y. Xie, Y. Mao
Crystal Structure Of Human Guanosine Monophosphate Reductase 2 (Gmpr2) In Complex With Gmp
J. Mol. Biol. V. 355 980 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 11)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
1b: GUANOSINE-5'-MONOPHOSPHATE (5GPb)
1c: GUANOSINE-5'-MONOPHOSPHATE (5GPc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
3
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:33 , ARG A:34 , SER A:35 , LYS A:325
BINDING SITE FOR RESIDUE SO4 A 400
02
AC2
SOFTWARE
PHE A:149 , PRO A:150 , GLN A:151 , HIS A:152
BINDING SITE FOR RESIDUE SO4 A 401
03
AC3
SOFTWARE
THR B:33 , ARG B:34 , SER B:35 , LYS B:323 , LYS B:325
BINDING SITE FOR RESIDUE SO4 B 1400
04
AC4
SOFTWARE
PHE B:149 , PRO B:150 , GLN B:151 , HIS B:152
BINDING SITE FOR RESIDUE SO4 B 1401
05
AC5
SOFTWARE
THR C:33 , ARG C:34 , SER C:35
BINDING SITE FOR RESIDUE SO4 C 2400
06
AC6
SOFTWARE
PHE C:149 , PRO C:150 , GLN C:151 , HIS C:152
BINDING SITE FOR RESIDUE SO4 C 2401
07
AC7
SOFTWARE
THR D:33 , ARG D:34 , SER D:35 , LYS D:325
BINDING SITE FOR RESIDUE SO4 D 3400
08
AC8
SOFTWARE
GLY D:183 , SER D:184 , GLY D:220 , GLY D:221 , CYS D:222 , GLY D:242 , GLY D:243
BINDING SITE FOR RESIDUE SO4 D 3500
09
AC9
SOFTWARE
MET A:55 , GLY A:183 , SER A:184 , CYS A:186 , THR A:188 , ASP A:219 , GLY A:220 , GLY A:221 , GLY A:242 , GLY A:243 , GLY A:268 , MET A:269 , SER A:270 , ARG A:286 , ALA A:287 , SER A:288 , GLY A:290
BINDING SITE FOR RESIDUE 5GP A 500
10
BC1
SOFTWARE
ALA B:53 , MET B:55 , GLY B:183 , SER B:184 , CYS B:186 , THR B:188 , ASP B:219 , GLY B:220 , GLY B:221 , GLY B:242 , GLY B:243 , GLY B:268 , SER B:270 , ARG B:286 , SER B:288 , GLY B:290
BINDING SITE FOR RESIDUE 5GP B 500
11
BC2
SOFTWARE
ALA C:53 , MET C:55 , SER C:184 , CYS C:186 , THR C:188 , ASP C:219 , GLY C:220 , GLY C:221 , GLY C:242 , GLY C:243 , GLY C:268 , MET C:269 , SER C:270 , GLY C:290
BINDING SITE FOR RESIDUE 5GP C 500
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049602 (G242D, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049602
G
242
D
GMPR2_HUMAN
Polymorphism
34354104
A/B/C/D
G
242
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IMP_DH_GMP_RED (A:176-188,B:176-188,C:176-188,D:17...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMP_DH_GMP_RED
PS00487
IMP dehydrogenase / GMP reductase signature.
GMPR2_HUMAN
176-188
4
A:176-188
B:176-188
C:176-188
D:176-188
[
close PROSITE info
]
Exons
(9, 36)
Info
All Exons
Exon 1.2d (A:1-29 | B:1-29 | C:1-29 | D:1-29)
Exon 1.3 (A:30-69 | B:30-69 | C:30-69 | D:30...)
Exon 1.4 (A:70-97 | B:70-97 | C:70-97 | D:70...)
Exon 1.5 (A:98-155 | B:98-155 | C:98-155 | D...)
Exon 1.6 (A:156-183 | B:156-183 | C:156-183 ...)
Exon 1.7 (A:183-218 | B:183-218 | C:183-218 ...)
Exon 1.8 (A:219-233 | B:219-233 | C:219-233 ...)
Exon 1.9a (A:233-286 | B:233-286 | C:233-278 ...)
Exon 1.9c (A:286-338 | B:286-338 (gaps) | C:2...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2a/1.2d
02: Boundary 1.2d/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9a
09: Boundary 1.9a/1.9c
10: Boundary 1.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000399440
2a
ENSE00001538316
chr14:
24702103-24702183
81
GMPR2_HUMAN
-
0
0
-
-
1.2d
ENST00000399440
2d
ENSE00001336873
chr14:
24702425-24702546
122
GMPR2_HUMAN
1-29
29
4
A:1-29
B:1-29
C:1-29
D:1-29
29
29
29
29
1.3
ENST00000399440
3
ENSE00000654361
chr14:
24702685-24702804
120
GMPR2_HUMAN
30-69
40
4
A:30-69
B:30-69
C:30-69
D:30-69
40
40
40
40
1.4
ENST00000399440
4
ENSE00000654362
chr14:
24704943-24705026
84
GMPR2_HUMAN
70-97
28
4
A:70-97
B:70-97
C:70-97
D:70-97
28
28
28
28
1.5
ENST00000399440
5
ENSE00001383245
chr14:
24705173-24705346
174
GMPR2_HUMAN
98-155
58
4
A:98-155
B:98-155
C:98-155
D:98-155
58
58
58
58
1.6
ENST00000399440
6
ENSE00001652114
chr14:
24706277-24706358
82
GMPR2_HUMAN
156-183
28
4
A:156-183
B:156-183
C:156-183
D:156-183
28
28
28
28
1.7
ENST00000399440
7
ENSE00000654366
chr14:
24706451-24706557
107
GMPR2_HUMAN
183-218
36
4
A:183-218
B:183-218
C:183-218
D:183-218
36
36
36
36
1.8
ENST00000399440
8
ENSE00000654367
chr14:
24706726-24706768
43
GMPR2_HUMAN
219-233
15
4
A:219-233
B:219-233
C:219-233
D:219-233
15
15
15
15
1.9a
ENST00000399440
9a
ENSE00000654368
chr14:
24707452-24707611
160
GMPR2_HUMAN
233-286
54
4
A:233-286
B:233-286
C:233-278
D:233-267
54
54
46
35
1.9c
ENST00000399440
9c
ENSE00000889423
chr14:
24707795-24708445
651
GMPR2_HUMAN
286-348
63
4
A:286-338
B:286-338 (gaps)
C:290-338
D:290-339
53
53
49
50
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (194 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2A7R
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help