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2A66
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (28 KB)
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(1)
Title
:
HUMAN LIVER RECEPTOR HOMOLOGUE DNA-BINDING DOMAIN (HLRH-1 DBD) IN COMPLEX WITH DSDNA FROM THE HCYP7A1 PROMOTER
Authors
:
I. H. Solomon, J. M. Hager, R. Safi, D. P. Mcdonnell, M. R. Redinbo, E. A. Ortlund
Date
:
01 Jul 05 (Deposition) - 06 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Nuclear Receptor, Protein-Dna Complex, Zinc Finger, Dna- Binding Domain, Transcription Factor, Ftz-F1, C-Terminal Extension, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. H. Solomon, J. M. Hager, R. Safi, D. P. Mcdonnell, M. R. Redinbo, E. A. Ortlund
Crystal Structure Of The Human Lrh-1 Dbd-Dna Complex Reveals Ftz-F1 Domain Positioning Is Required For Receptor Activity.
J. Mol. Biol. V. 354 1091 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:86 , CYS A:89 , CYS A:103 , CYS A:106
BINDING SITE FOR RESIDUE ZN A 401
2
AC2
SOFTWARE
CYS A:122 , CYS A:128 , CYS A:138 , CYS A:141 , ACT A:801
BINDING SITE FOR RESIDUE ZN A 402
3
AC3
SOFTWARE
CYS A:122 , ILE A:123 , GLU A:124 , CYS A:128 , CYS A:138 , ZN A:402
BINDING SITE FOR RESIDUE ACT A 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NUCLEAR_REC_DBD_1 (A:86-112)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUCLEAR_REC_DBD_1
PS00031
Nuclear hormones receptors DNA-binding region signature.
NR5A2_HUMAN
86-112
1
A:86-112
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Exons
(3, 3)
Info
All Exons
Exon 1.5a (A:84-107)
Exon 1.6 (A:108-155)
Exon 1.7 (A:155-178)
View:
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All Exon Boundaries
1: Boundary 1.4b/1.5a
2: Boundary 1.5a/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.9
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367362
1a
ENSE00001869866
chr1:
199996730-199997039
310
NR5A2_HUMAN
1-22
22
0
-
-
1.4b
ENST00000367362
4b
ENSE00001624402
chr1:
200008786-200008923
138
NR5A2_HUMAN
22-68
47
0
-
-
1.5a
ENST00000367362
5a
ENSE00001705336
chr1:
200012902-200013020
119
NR5A2_HUMAN
68-107
40
1
A:84-107
24
1.6
ENST00000367362
6
ENSE00001742097
chr1:
200014571-200014712
142
NR5A2_HUMAN
108-155
48
1
A:108-155
48
1.7
ENST00000367362
7
ENSE00001616774
chr1:
200017300-200017946
647
NR5A2_HUMAN
155-370
216
1
A:155-178
24
1.9
ENST00000367362
9
ENSE00001680332
chr1:
200080330-200080449
120
NR5A2_HUMAN
371-410
40
0
-
-
1.10
ENST00000367362
10
ENSE00001632410
chr1:
200089936-200090083
148
NR5A2_HUMAN
411-460
50
0
-
-
1.11b
ENST00000367362
11b
ENSE00001420464
chr1:
200143091-200146552
3462
NR5A2_HUMAN
460-541
82
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2a66a_ (A:)
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)
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Families
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2a66a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2a66A00 (A:84-178)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Erythroid Transcription Factor GATA-1; Chain A
(61)
Homologous Superfamily
:
Erythroid Transcription Factor GATA-1, subunit A
(61)
Human (Homo sapiens)
(8)
1a
2a66A00
A:84-178
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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