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2A41
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
TERNARY COMPLEX OF THE WH2 DOMAIN OF WIP WITH ACTIN-DNASE I
Authors
:
D. Chereau, F. Kerff, R. Dominguez
Date
:
27 Jun 05 (Deposition) - 01 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Wip, Wh2, Wasp, Actin, Dnase I, Arp2/3, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Chereau, F. Kerff, P. Graceffa, Z. Grabarek, K. Langsetmo, R. Dominguez
Actin-Bound Structures Of Wiskott-Aldrich Syndrome Protein (Wasp)-Homology Domain 2 And The Implications For Filament Assembly
Proc. Natl. Acad. Sci. Usa V. 102 16644 2005
[
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Hetero Components
(7, 9)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: FORMIC ACID (FMTa)
5a: 4-METHYL-HISTIDINE (HICa)
6a: MAGNESIUM ION (MGa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
2
Ligand/Ion
CALCIUM ION
4
FMT
1
Ligand/Ion
FORMIC ACID
5
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
6
MG
1
Ligand/Ion
MAGNESIUM ION
7
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:18 , LEU B:21 , ALA B:248 , NAG B:271
BINDING SITE FOR RESIDUE NAG B 270
2
AC2
SOFTWARE
MET B:245 , NAG B:270 , BMA B:272
BINDING SITE FOR RESIDUE NAG B 271
3
AC3
SOFTWARE
NAG B:271
BINDING SITE FOR RESIDUE BMA B 272
4
AC4
SOFTWARE
ATP A:1380 , HOH A:1397 , HOH A:1402 , HOH A:1404 , HOH A:1425 , HOH A:1483
BINDING SITE FOR RESIDUE CA A 1381
5
AC5
SOFTWARE
ASP B:201 , THR B:203 , THR B:205 , THR B:207 , HOH B:1281 , HOH B:1287
BINDING SITE FOR RESIDUE CA B 1273
6
AC6
SOFTWARE
ASP B:172 , ASP B:198 , HOH B:1280 , HOH B:1290 , HOH B:1353
BINDING SITE FOR RESIDUE MG B 1274
7
AC7
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , MET A:305 , TYR A:306 , CA A:1381 , HOH A:1399 , HOH A:1400 , HOH A:1404 , HOH A:1425 , HOH A:1483
BINDING SITE FOR RESIDUE ATP A 1380
8
AC8
SOFTWARE
ARG B:30 , ARG B:31 , ASP B:33
BINDING SITE FOR RESIDUE FMT B 1275
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DNAS1_BOVIN_001 (H121P, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DNAS1_BOVIN_001
*
H
143
P
DNAS1_BOVIN
---
---
B
H
121
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: WH2 (C:32-49)
2: ACTINS_1 (A:53-63)
3: ACTINS_ACT_LIKE (A:104-116)
4: DNASE_I_1 (B:130-150)
5: DNASE_I_2 (B:167-174)
6: ACTINS_2 (A:356-364)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WH2
PS51082
WH2 domain profile.
WIPF1_HUMAN
32-49
1
C:32-49
2
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
3
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
4
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_BOVIN
152-172
1
B:130-150
5
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_BOVIN
189-196
1
B:167-174
6
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.2 (B:1-27)
Exon 1.3 (B:28-57)
Exon 1.4 (B:57-85)
Exon 1.5 (B:85-124)
Exon 1.6 (B:124-161)
Exon 1.7 (B:162-213)
Exon 1.8 (B:213-245)
Exon 1.9 (B:246-260)
Exon 2.13a (C:29-60)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/-
10: Boundary 2.12a/2.13a
11: Boundary 2.13a/2.14b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000026784
1
ENSBTAE00000293181
chr25:
3564711-3564829
119
DNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000026784
2
ENSBTAE00000218065
chr25:
3565156-3565303
148
DNAS1_BOVIN
1-49
49
1
B:1-27
27
1.3
ENSBTAT00000026784
3
ENSBTAE00000420413
chr25:
3565639-3565727
89
DNAS1_BOVIN
50-79
30
1
B:28-57
30
1.4
ENSBTAT00000026784
4
ENSBTAE00000410212
chr25:
3565904-3565987
84
DNAS1_BOVIN
79-107
29
1
B:57-85
29
1.5
ENSBTAT00000026784
5
ENSBTAE00000218074
chr25:
3566232-3566347
116
DNAS1_BOVIN
107-146
40
1
B:85-124
40
1.6
ENSBTAT00000026784
6
ENSBTAE00000407443
chr25:
3566499-3566611
113
DNAS1_BOVIN
146-183
38
1
B:124-161
38
1.7
ENSBTAT00000026784
7
ENSBTAE00000398022
chr25:
3566701-3566855
155
DNAS1_BOVIN
184-235
52
1
B:162-213
52
1.8
ENSBTAT00000026784
8
ENSBTAE00000425804
chr25:
3567129-3567225
97
DNAS1_BOVIN
235-267
33
1
B:213-245
33
1.9
ENSBTAT00000026784
9
ENSBTAE00000293180
chr25:
3567369-3567733
365
DNAS1_BOVIN
268-282
15
1
B:246-260
15
2.5b
ENST00000392547
5b
ENSE00001512346
chr2:
175499307-175499246
62
WIPF1_HUMAN
-
0
0
-
-
2.12a
ENST00000392547
12a
ENSE00002154368
chr2:
175450339-175450251
89
WIPF1_HUMAN
1-17
17
0
-
-
2.13a
ENST00000392547
13a
ENSE00000782467
chr2:
175446167-175446038
130
WIPF1_HUMAN
18-61
44
1
C:29-60
32
2.14b
ENST00000392547
14b
ENSE00000782466
chr2:
175440108-175439932
177
WIPF1_HUMAN
61-120
60
0
-
-
2.16c
ENST00000392547
16c
ENSE00001380779
chr2:
175437174-175436404
771
WIPF1_HUMAN
120-377
258
0
-
-
2.19
ENST00000392547
19
ENSE00000882867
chr2:
175432801-175432589
213
WIPF1_HUMAN
377-448
72
0
-
-
2.20b
ENST00000392547
20b
ENSE00001073352
chr2:
175431911-175431798
114
WIPF1_HUMAN
448-486
39
0
-
-
2.21e
ENST00000392547
21e
ENSE00001824297
chr2:
175427330-175424300
3031
WIPF1_HUMAN
486-503
18
0
-
-
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2a41b_ (B:)
2a: SCOP_d2a41a1 (A:7-146)
2b: SCOP_d2a41a2 (A:147-371)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
Deoxyribonuclease I
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d2a41b_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d2a41a1
A:7-146
2b
d2a41a2
A:147-371
[
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CATH Domains
(4, 5)
Info
all CATH domains
1a: CATH_2a41A01 (A:6-34,A:71-134,A:337-373)
1b: CATH_2a41A03 (A:136-181,A:271-332)
2a: CATH_2a41B00 (B:1-260)
3a: CATH_2a41A04 (A:182-267)
4a: CATH_2a41A02 (A:35-68)
View:
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(
)
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)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
2a41A01
A:6-34,A:71-134,A:337-373
1b
2a41A03
A:136-181,A:271-332
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Deoxyribonuclease I; Chain A
(35)
Homologous Superfamily
:
[code=3.60.10.10, no name defined]
(35)
Rabbit (Oryctolagus cuniculus)
(7)
2a
2a41B00
B:1-260
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
3a
2a41A04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
4a
2a41A02
A:35-68
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Nucleic
Backbone
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Protein & NOT PROSITE
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Chain C
Asymmetric Unit 1
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