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Getting 'Exon' information from database.
2A1T
Asym. Unit
Info
Asym.Unit (333 KB)
Biol.Unit 1 (323 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN MCAD:ETF E165BETAA COMPLEX
Authors
:
H. S. Toogood, A. Van Thiel, N. S. Scrutton, D. Leys
Date
:
21 Jun 05 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,R,S
Biol. Unit 1: A,B,C,D,R,S (1x)
Keywords
:
Electron Transfer, Domain Dynamics, Conformational Sampling, Protein:Protein Complex, Fatty Acid B-Degradation, Oxidoreductase/Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Toogood, A. Van Thiel, N. S. Scrutton, D. Leys
Stabilization Of Non-Productive Conformations Underpins Rapid Electron Transfer To Electron-Transferring Flavoprotein
J. Biol. Chem. V. 280 30361 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
FAD
5
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA S:9 , VAL S:10 , LYS S:11 , ASN S:39 , CYS S:42 , CYS S:66 , LEU S:122 , GLY S:123 , GLN S:125 , ALA S:126 , ASP S:129 , CYS S:131 , ASN S:132 , GLN S:133 , THR S:134
BINDING SITE FOR RESIDUE AMP S 600
2
AC2
SOFTWARE
TYR A:133 , VAL A:135 , THR A:136 , GLY A:141 , SER A:142 , TRP A:166 , ILE A:167 , THR A:168 , ILE A:371 , ILE A:374 , TYR A:375 , GLU A:376 , THR A:378 , GLN A:380 , LEU A:384 , HOH A:412 , ARG B:281 , THR B:283 , PHE B:284 , LEU B:288 , HIS B:291 , GLN B:349 , ILE B:350 , GLY B:353 , GLN D:292
BINDING SITE FOR RESIDUE FAD A 399
3
AC3
SOFTWARE
ARG A:281 , THR A:283 , PHE A:284 , LEU A:288 , HIS A:291 , ILE A:294 , GLN A:349 , ILE A:350 , GLY A:353 , TYR B:133 , VAL B:135 , THR B:136 , GLY B:141 , SER B:142 , TRP B:166 , THR B:168 , ILE B:371 , TYR B:375 , THR B:378 , GLN B:380 , GLN C:292
BINDING SITE FOR RESIDUE FAD B 1399
4
AC4
SOFTWARE
GLN B:292 , TYR C:133 , VAL C:135 , THR C:136 , GLY C:141 , SER C:142 , TRP C:166 , ILE C:167 , THR C:168 , ASN C:214 , ILE C:371 , ILE C:374 , THR C:378 , GLN C:380 , ARG D:281 , THR D:283 , PHE D:284 , LEU D:288 , HIS D:291 , GLN D:349 , ILE D:350 , GLY D:353
BINDING SITE FOR RESIDUE FAD C 2399
5
AC5
SOFTWARE
GLN A:292 , ARG C:281 , THR C:283 , PHE C:284 , LEU C:288 , HIS C:291 , ILE C:294 , GLN C:349 , ILE C:350 , GLY C:353 , TYR D:133 , VAL D:135 , THR D:136 , GLY D:141 , SER D:142 , TRP D:166 , THR D:168 , ILE D:371 , ILE D:374 , TYR D:375 , THR D:378 , GLN D:380 , HOH D:3402
BINDING SITE FOR RESIDUE FAD D 3399
6
AC6
SOFTWARE
GLN C:163 , MET C:165 , ASN D:357 , GLY R:222 , ARG R:223 , GLY R:224 , LYS R:226 , SER R:248 , ARG R:249 , ALA R:250 , GLN R:262 , VAL R:263 , GLY R:264 , GLN R:265 , THR R:266 , GLY R:267 , GLY R:279 , ILE R:280 , SER R:281 , ALA R:283 , GLN R:285 , HIS R:286 , ASN R:300 , LYS R:301 , ASP R:302 , ALA R:317 , ASP R:318 , LEU R:319 , PHE R:320 , HOH R:602
BINDING SITE FOR RESIDUE FAD R 599
[
close Site info
]
SAPs(SNPs)/Variants
(27, 87)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_000317 (R28C, chain A/B/C/D, )
02: VAR_013698 (Y42H, chain A/B/C/D, )
03: VAR_015954 (I53T, chain A/B/C/D, )
04: VAR_015955 (C91Y, chain A/B/C/D, )
05: VAR_015956 (T96I, chain A/B/C/D, )
06: VAR_035716 (P107R, chain A/B/C/D, )
07: VAR_002366 (G116R, chain R, )
08: VAR_000319 (M124I, chain A/B/C/D, )
09: VAR_025804 (D128N, chain S, )
10: VAR_008548 (T154M, chain S, )
11: VAR_002367 (V157G, chain R, )
12: VAR_002369 (R164Q, chain S, )
13: VAR_000320 (T168A, chain A/B/C/D, )
14: VAR_000321 (G170R, chain A/B/C/D, )
15: VAR_008547 (T171I, chain R, )
16: VAR_015957 (R181L, chain A/B/C/D, )
17: VAR_000322 (C219R, chain A/B/C/D, )
18: VAR_013699 (S220L, chain A/B/C/D, )
19: VAR_000323 (G242R, chain A/B/C/D, )
20: VAR_013700 (R256T, chain A/B/C/D, )
21: VAR_002368 (T266M, chain R, )
22: VAR_015958 (G285R, chain A/B/C/D, )
23: VAR_000324 (M301T, chain A/B/C/D, )
24: VAR_000325 (K304E, chain A/B/C/D, )
25: VAR_000326 (S311R, chain A/B/C/D, )
26: VAR_015959 (Y327C, chain A/B/C/D, )
27: VAR_000327 (I350T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000317
R
53
C
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
28
C
02
UniProt
VAR_013698
Y
67
H
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
Y
42
H
03
UniProt
VAR_015954
I
78
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
I
53
T
04
UniProt
VAR_015955
C
116
Y
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
C
91
Y
05
UniProt
VAR_015956
T
121
I
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
T
96
I
06
UniProt
VAR_035716
P
132
R
ACADM_HUMAN
Unclassified
---
A/B/C/D
P
107
R
07
UniProt
VAR_002366
G
116
R
ETFA_HUMAN
Disease (GA2A)
---
R
G
116
R
08
UniProt
VAR_000319
M
149
I
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
M
124
I
09
UniProt
VAR_025804
D
128
N
ETFB_HUMAN
Disease (GA2B)
---
S
D
128
N
10
UniProt
VAR_008548
T
154
M
ETFB_HUMAN
Polymorphism
1130426
S
T
154
M
11
UniProt
VAR_002367
V
157
G
ETFA_HUMAN
Disease (GA2A)
---
R
V
157
G
12
UniProt
VAR_002369
R
164
Q
ETFB_HUMAN
Disease (GA2B)
104894677
S
R
164
Q
13
UniProt
VAR_000320
T
193
A
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
T
168
A
14
UniProt
VAR_000321
G
195
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
170
R
15
UniProt
VAR_008547
T
171
I
ETFA_HUMAN
Polymorphism
1801591
R
T
171
I
16
UniProt
VAR_015957
R
206
L
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
181
L
17
UniProt
VAR_000322
C
244
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
C
219
R
18
UniProt
VAR_013699
S
245
L
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
S
220
L
19
UniProt
VAR_000323
G
267
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
242
R
20
UniProt
VAR_013700
R
281
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
256
T
21
UniProt
VAR_002368
T
266
M
ETFA_HUMAN
Disease (GA2A)
---
R
T
266
M
22
UniProt
VAR_015958
G
310
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
285
R
23
UniProt
VAR_000324
M
326
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
M
301
T
24
UniProt
VAR_000325
K
329
E
ACADM_HUMAN
Disease (ACADMD)
77931234
A/B/C/D
K
304
E
25
UniProt
VAR_000326
S
336
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
S
311
R
26
UniProt
VAR_015959
Y
352
C
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
Y
327
C
27
UniProt
VAR_000327
I
375
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
I
350
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 10)
Info
All PROSITE Patterns/Profiles
1: ACYL_COA_DH_1 (A:134-146,B:134-146,C:134-146,D:13...)
2: ETF_BETA (S:162-182)
3: ETF_ALPHA (R:274-300)
4: ACYL_COA_DH_2 (A:349-368,B:349-368,C:349-368,D:34...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYL_COA_DH_1
PS00072
Acyl-CoA dehydrogenases signature 1.
ACADM_HUMAN
159-171
4
A:134-146
B:134-146
C:134-146
D:134-146
2
ETF_BETA
PS01065
Electron transfer flavoprotein beta-subunit signature.
ETFB_HUMAN
162-182
1
S:162-182
3
ETF_ALPHA
PS00696
Electron transfer flavoprotein alpha-subunit signature.
ETFA_HUMAN
274-300
1
R:274-300
4
ACYL_COA_DH_2
PS00073
Acyl-CoA dehydrogenases signature 2.
ACADM_HUMAN
374-393
4
A:349-368
B:349-368
C:349-368
D:349-368
[
close PROSITE info
]
Exons
(17, 50)
Info
All Exons
Exon 1.1 (S:3-19)
Exon 1.2b (S:20-72)
Exon 1.3 (S:73-125)
Exon 1.4 (S:126-146)
Exon 1.5 (S:147-199)
Exon 1.6 (S:200-250 (gaps))
Exon 2.2b (A:10-15 | B:10-15 | C:9-15 | D:10-...)
Exon 2.3b (A:15-47 | B:15-47 | C:15-47 | D:15...)
Exon 2.4b (A:48-71 | B:48-71 | C:48-71 | D:48...)
Exon 2.4g (A:71-104 | B:71-104 | C:71-104 | D...)
Exon 2.5b (A:105-131 | B:105-131 | C:105-131 ...)
Exon 2.6 (A:132-175 | B:132-175 | C:132-175 ...)
Exon 2.7b (A:175-211 | B:175-211 | C:175-211 ...)
Exon 2.8d (A:212-258 | B:212-258 | C:212-258 ...)
Exon 2.9a (A:259-290 | B:259-290 | C:259-290 ...)
Exon 2.12c (A:291-373 | B:291-373 | C:291-373 ...)
Exon 2.13f (A:374-395 | B:374-396 | C:374-396 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2b
03: Boundary 1.2b/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/-
08: Boundary 2.1a/2.2b
09: Boundary 2.2b/2.3b
10: Boundary 2.3b/2.4b
11: Boundary 2.4b/2.4g
12: Boundary 2.4g/2.5b
13: Boundary 2.5b/2.6
14: Boundary 2.6/2.7b
15: Boundary 2.7b/2.8d
16: Boundary 2.8d/2.9a
17: Boundary 2.9a/2.12c
18: Boundary 2.12c/2.13f
19: Boundary 2.13f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000309244
1
ENSE00001384271
chr19:
51869672-51869524
149
ETFB_HUMAN
1-19
19
1
S:3-19
17
1.2b
ENST00000309244
2b
ENSE00001225639
chr19:
51857562-51857404
159
ETFB_HUMAN
20-72
53
1
S:20-72
53
1.3
ENST00000309244
3
ENSE00000722381
chr19:
51856544-51856386
159
ETFB_HUMAN
73-125
53
1
S:73-125
53
1.4
ENST00000309244
4
ENSE00000722391
chr19:
51853645-51853583
63
ETFB_HUMAN
126-146
21
1
S:126-146
21
1.5
ENST00000309244
5
ENSE00000722401
chr19:
51850312-51850154
159
ETFB_HUMAN
147-199
53
1
S:147-199
53
1.6
ENST00000309244
6
ENSE00001471664
chr19:
51848635-51848410
226
ETFB_HUMAN
200-255
56
1
S:200-250 (gaps)
51
2.1a
ENST00000370841
1a
ENSE00001844831
chr1:
76190036-76190502
467
ACADM_HUMAN
1-10
10
0
-
-
2.2b
ENST00000370841
2b
ENSE00000830661
chr1:
76194086-76194173
88
ACADM_HUMAN
11-40
30
4
A:10-15
B:10-15
C:9-15
D:10-15
6
6
7
6
2.3b
ENST00000370841
3b
ENSE00000830662
chr1:
76198329-76198426
98
ACADM_HUMAN
40-72
33
4
A:15-47
B:15-47
C:15-47
D:15-47
33
33
33
33
2.4b
ENST00000370841
4b
ENSE00000830663
chr1:
76198538-76198607
70
ACADM_HUMAN
73-96
24
4
A:48-71
B:48-71
C:48-71
D:48-71
24
24
24
24
2.4g
ENST00000370841
4g
ENSE00000830664
chr1:
76199213-76199313
101
ACADM_HUMAN
96-129
34
4
A:71-104
B:71-104
C:71-104
D:71-104
34
34
34
34
2.5b
ENST00000370841
5b
ENSE00000830665
chr1:
76200476-76200556
81
ACADM_HUMAN
130-156
27
4
A:105-131
B:105-131
C:105-131
D:105-131
27
27
27
27
2.6
ENST00000370841
6
ENSE00000830666
chr1:
76205665-76205795
131
ACADM_HUMAN
157-200
44
4
A:132-175
B:132-175
C:132-175
D:132-175
44
44
44
44
2.7b
ENST00000370841
7b
ENSE00000830671
chr1:
76211491-76211599
109
ACADM_HUMAN
200-236
37
4
A:175-211
B:175-211
C:175-211
D:175-211
37
37
37
37
2.8d
ENST00000370841
8d
ENSE00000931972
chr1:
76215104-76215244
141
ACADM_HUMAN
237-283
47
4
A:212-258
B:212-258
C:212-258
D:212-258
47
47
47
47
2.9a
ENST00000370841
9a
ENSE00000931973
chr1:
76216136-76216231
96
ACADM_HUMAN
284-315
32
4
A:259-290
B:259-290
C:259-290
D:259-290
32
32
32
32
2.12c
ENST00000370841
12c
ENSE00000931974
chr1:
76226807-76227055
249
ACADM_HUMAN
316-398
83
4
A:291-373
B:291-373
C:291-373
D:291-373
83
83
83
83
2.13f
ENST00000370841
13f
ENSE00001513957
chr1:
76228377-76229364
988
ACADM_HUMAN
399-421
23
4
A:374-395
B:374-396
C:374-396
D:374-396
22
23
23
23
[
close EXON info
]
SCOP Domains
(5, 11)
Info
All SCOP Domains
1a: SCOP_d2a1ta1 (A:242-395)
1b: SCOP_d2a1tb1 (B:242-396)
1c: SCOP_d2a1tc1 (C:242-396)
1d: SCOP_d2a1td1 (D:242-396)
2a: SCOP_d2a1tr1 (R:18-205)
3a: SCOP_d2a1ts1 (S:3-250)
4a: SCOP_d2a1tr2 (R:209-333)
5a: SCOP_d2a1ta2 (A:10-241)
5b: SCOP_d2a1tb2 (B:10-241)
5c: SCOP_d2a1tc2 (C:9-241)
5d: SCOP_d2a1td2 (D:10-241)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2a1ta1
A:242-395
1b
d2a1tb1
B:242-396
1c
d2a1tc1
C:242-396
1d
d2a1td1
D:242-396
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
ETFP subunits
(25)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2a1tr1
R:18-205
Protein domain
:
Small, beta subunit of electron transfer flavoprotein ETFP
(12)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d2a1ts1
S:3-250
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(12)
4a
d2a1tr2
R:209-333
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
(32)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(3)
5a
d2a1ta2
A:10-241
5b
d2a1tb2
B:10-241
5c
d2a1tc2
C:9-241
5d
d2a1td2
D:10-241
[
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CATH Domains
(5, 15)
Info
all CATH domains
1a: CATH_2a1tR02 (R:205-333)
2a: CATH_2a1tR01 (R:18-198)
2b: CATH_2a1tS01 (S:3-223)
3a: CATH_2a1tA01 (A:12-130)
3b: CATH_2a1tB01 (B:12-130)
3c: CATH_2a1tC01 (C:12-130)
3d: CATH_2a1tD01 (D:12-130)
4a: CATH_2a1tA03 (A:252-392)
4b: CATH_2a1tB03 (B:252-392)
4c: CATH_2a1tC03 (C:252-392)
4d: CATH_2a1tD03 (D:252-392)
5a: CATH_2a1tA02 (A:131-251)
5b: CATH_2a1tB02 (B:131-251)
5c: CATH_2a1tC02 (C:131-251)
5d: CATH_2a1tD02 (D:131-251)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
TPP-binding domain
(120)
Human (Homo sapiens)
(9)
1a
2a1tR02
R:205-333
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Human (Homo sapiens)
(27)
2a
2a1tR01
R:18-198
2b
2a1tS01
S:3-223
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Butyryl-Coa Dehydrogenase, subunit A; domain 1
(28)
Homologous Superfamily
:
Butyryl-Coa Dehydrogenase, subunit A, domain 1
(28)
Human (Homo sapiens)
(10)
3a
2a1tA01
A:12-130
3b
2a1tB01
B:12-130
3c
2a1tC01
C:12-130
3d
2a1tD01
D:12-130
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Human (Homo sapiens)
(13)
4a
2a1tA03
A:252-392
4b
2a1tB03
B:252-392
4c
2a1tC03
C:252-392
4d
2a1tD03
D:252-392
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 2
(35)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 2
(35)
Human (Homo sapiens)
(14)
5a
2a1tA02
A:131-251
5b
2a1tB02
B:131-251
5c
2a1tC02
C:131-251
5d
2a1tD02
D:131-251
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Pfam Domains
(0, 0)
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