PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2A1O
Asym. Unit
Info
Asym.Unit (149 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (73 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF FERROUS DIOXYGEN COMPLEX OF T252A CYTOCHROME P450CAM
Authors
:
S. Nagano, T. L. Poulos
Date
:
20 Jun 05 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytochrome P450, Cyp, Dioxygen Complex, Oxy, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Nagano, T. L. Poulos
Crystallographic Study On The Dioxygen Complex Of Wild-Type And Mutant Cytochrome P450Cam. Implications For The Dioxygen Activation Mechanism
J. Biol. Chem. V. 280 31659 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 10)
Info
All Hetero Components
1a: CAMPHOR (CAMa)
1b: CAMPHOR (CAMb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
4a: OXYGEN MOLECULE (OXYa)
4b: OXYGEN MOLECULE (OXYb)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAM
2
Ligand/Ion
CAMPHOR
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
K
3
Ligand/Ion
POTASSIUM ION
4
OXY
2
Ligand/Ion
OXYGEN MOLECULE
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:84 , GLY A:93 , GLU A:94 , TYR A:96
BINDING SITE FOR RESIDUE K A 1515
02
AC2
SOFTWARE
PRO A:15 , PRO A:16 , VAL A:18 , GLU A:20 , THR B:217 , HOH B:2518
BINDING SITE FOR RESIDUE K A 715
03
AC3
SOFTWARE
GLU B:84 , GLY B:93 , GLU B:94 , TYR B:96
BINDING SITE FOR RESIDUE K B 2515
04
AC4
SOFTWARE
PRO A:100 , THR A:101 , GLN A:108 , ARG A:112 , LEU A:245 , GLY A:248 , GLY A:249 , ALA A:252 , VAL A:253 , ASP A:297 , ARG A:299 , GLN A:322 , THR A:349 , PHE A:350 , GLY A:351 , HIS A:355 , CYS A:357 , GLY A:359 , OXY A:420 , HOH A:1525 , HOH A:1618
BINDING SITE FOR RESIDUE HEM A 417
05
AC5
SOFTWARE
GLY A:248 , ALA A:252 , HEM A:417 , CAM A:1422 , HOH A:1573
BINDING SITE FOR RESIDUE OXY A 420
06
AC6
SOFTWARE
PHE A:87 , TYR A:96 , GLY A:248 , VAL A:295 , OXY A:420
BINDING SITE FOR RESIDUE CAM A 1422
07
AC7
SOFTWARE
PRO B:100 , THR B:101 , GLN B:108 , ARG B:112 , PHE B:163 , LEU B:245 , GLY B:248 , GLY B:249 , ALA B:252 , VAL B:253 , ASP B:297 , ARG B:299 , GLN B:322 , THR B:349 , PHE B:350 , GLY B:351 , HIS B:355 , CYS B:357 , GLY B:359 , OXY B:420 , HOH B:2541
BINDING SITE FOR RESIDUE HEM B 417
08
AC8
SOFTWARE
GLY B:248 , HEM B:417 , CAM B:2422 , HOH B:2553
BINDING SITE FOR RESIDUE OXY B 420
09
AC9
SOFTWARE
PHE B:87 , TYR B:96 , VAL B:295 , OXY B:420
BINDING SITE FOR RESIDUE CAM B 2422
10
BC1
SOFTWARE
GLU A:107 , HOH A:1524 , PRO B:268 , ARG B:271 , GLN B:272 , ILE B:275 , PRO B:379 , ASP B:380 , HOH B:2532 , HOH B:2569
BINDING SITE FOR RESIDUE TRS B 2430
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:350-359,B:350-359)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CPXA_PSEPU
351-360
2
A:350-359
B:350-359
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2a1oa_ (A:)
1b: SCOP_d2a1ob_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cytochrome P450-CAM
(108)
Pseudomonas putida [TaxId: 303]
(108)
1a
d2a1oa_
A:
1b
d2a1ob_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2a1oA00 (A:10-414)
1b: CATH_2a1oB00 (B:10-414)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Pseudomonas putida. Organism_taxid: 303.
(36)
1a
2a1oA00
A:10-414
1b
2a1oB00
B:10-414
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (149 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2A1O
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
