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2A19
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
PKR KINASE DOMAIN- EIF2ALPHA- AMP-PNP COMPLEX.
Authors
:
A. C. Dar, T. E. Dever, F. Sicheri
Date
:
19 Jun 05 (Deposition) - 27 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Transferase, Kinase, Protein Biosynthesis, Protein Synthesis- Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Dar, T. E. Dever, F. Sicheri
Higher-Order Substrate Recognition Of Eif2Alpha By The Rna-Dependent Protein Kinase Pkr.
Cell(Cambridge, Mass. ) V. 122 887 2005
[
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: PHOSPHATE ION (PO4a)
4a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:432 , ANP B:1640
BINDING SITE FOR RESIDUE MG B 1641
2
AC2
SOFTWARE
ASN B:419 , ASP B:432 , ANP B:1640
BINDING SITE FOR RESIDUE MG B 1642
3
AC3
SOFTWARE
ASN C:419 , ASP C:432 , ANP C:2640 , MG C:2641
BINDING SITE FOR RESIDUE MG C 2642
4
AC4
SOFTWARE
ASP C:414 , ASP C:432 , ANP C:2640 , MG C:2642
BINDING SITE FOR RESIDUE MG C 2641
5
AC5
SOFTWARE
LYS C:304 , ARG C:307 , ARG C:413
BINDING SITE FOR RESIDUE PO4 C 901
6
AC6
SOFTWARE
GLY B:279 , VAL B:281 , VAL B:294 , LYS B:296 , MET B:366 , GLU B:367 , CYS B:369 , SER B:418 , ASN B:419 , PHE B:421 , ASP B:432 , MG B:1641 , MG B:1642
BINDING SITE FOR RESIDUE ANP B 1640
7
AC7
SOFTWARE
HOH C:36 , ILE C:273 , GLY C:274 , VAL C:294 , GLU C:367 , PHE C:368 , CYS C:369 , PHE C:421 , MG C:2641 , MG C:2642
BINDING SITE FOR RESIDUE ANP C 2640
[
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]
SAPs(SNPs)/Variants
(3, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040474 (V428E, chain B/C, )
2: VAR_040475 (L439V, chain B, )
3: VAR_040476 (I506V, chain B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040474
V
428
E
E2AK2_HUMAN
Polymorphism
56219559
B/C
V
428
E
2
UniProt
VAR_040475
L
439
V
E2AK2_HUMAN
Unclassified
---
B
L
439
V
3
UniProt
VAR_040476
I
506
V
E2AK2_HUMAN
Polymorphism
34821155
B/C
I
506
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: S1 (A:16-87)
2: PROTEIN_KINASE_ATP (B:273-296,C:273-296)
3: PROTEIN_KINASE_ST (B:410-422,C:410-422)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
S1
PS50126
S1 domain profile.
IF2A_YEAST
17-88
1
A:16-87
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
E2AK2_HUMAN
273-296
2
B:273-296
C:273-296
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
E2AK2_HUMAN
410-422
2
B:410-422
C:410-422
[
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]
Exons
(9, 17)
Info
All Exons
Exon 1.10 (B:256-262 | C:257-262)
Exon 1.11 (B:262-303 | C:262-303)
Exon 1.12 (B:303-356 (gaps) | C:303-337)
Exon 1.13b (B:356-416 | C:358-416 (gaps))
Exon 1.15 (B:417-459 | C:417-436)
Exon 1.16b (B:460-493 | C:466-482)
Exon 1.17 (B:494-511 | C:501-511)
Exon 1.18c (B:512-541 | C:512-541)
Exon 2.1 (A:2-174 (gaps))
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.9a/1.10
02: Boundary 1.10/1.11
03: Boundary 1.11/1.12
04: Boundary 1.12/1.13b
05: Boundary 1.13b/1.15
06: Boundary 1.15/1.16b
07: Boundary 1.16b/1.17
08: Boundary 1.17/1.18c
09: Boundary 1.18c/-
10: Boundary -/2.1
11: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000395127
1b
ENSE00001479941
chr2:
37384190-37384051
140
E2AK2_HUMAN
-
0
0
-
-
1.2a
ENST00000395127
2a
ENSE00001520686
chr2:
37376400-37376000
401
E2AK2_HUMAN
-
0
0
-
-
1.3a
ENST00000395127
3a
ENSE00000809607
chr2:
37374965-37374831
135
E2AK2_HUMAN
1-40
40
0
-
-
1.4a
ENST00000395127
4a
ENSE00000747498
chr2:
37374116-37373996
121
E2AK2_HUMAN
40-80
41
0
-
-
1.5c
ENST00000395127
5c
ENSE00000747497
chr2:
37368844-37368696
149
E2AK2_HUMAN
81-130
50
0
-
-
1.6
ENST00000395127
6
ENSE00000747496
chr2:
37366900-37366774
127
E2AK2_HUMAN
130-172
43
0
-
-
1.7
ENST00000395127
7
ENSE00000747494
chr2:
37365728-37365652
77
E2AK2_HUMAN
173-198
26
0
-
-
1.8
ENST00000395127
8
ENSE00000747492
chr2:
37365506-37365413
94
E2AK2_HUMAN
198-229
32
0
-
-
1.9a
ENST00000395127
9a
ENSE00000747490
chr2:
37364160-37364126
35
E2AK2_HUMAN
230-241
12
0
-
-
1.10
ENST00000395127
10
ENSE00000747488
chr2:
37362689-37362627
63
E2AK2_HUMAN
241-262
22
2
B:256-262
C:257-262
7
6
1.11
ENST00000395127
11
ENSE00000747487
chr2:
37353554-37353432
123
E2AK2_HUMAN
262-303
42
2
B:262-303
C:262-303
42
42
1.12
ENST00000395127
12
ENSE00000747486
chr2:
37349807-37349649
159
E2AK2_HUMAN
303-356
54
2
B:303-356 (gaps)
C:303-337
54
35
1.13b
ENST00000395127
13b
ENSE00000397476
chr2:
37347282-37347102
181
E2AK2_HUMAN
356-416
61
2
B:356-416
C:358-416 (gaps)
61
59
1.15
ENST00000395127
15
ENSE00000747412
chr2:
37342002-37341874
129
E2AK2_HUMAN
417-459
43
2
B:417-459
C:417-436
43
20
1.16b
ENST00000395127
16b
ENSE00000747411
chr2:
37336438-37336337
102
E2AK2_HUMAN
460-493
34
2
B:460-493
C:466-482
34
17
1.17
ENST00000395127
17
ENSE00000747410
chr2:
37334670-37334617
54
E2AK2_HUMAN
494-511
18
2
B:494-511
C:501-511
18
11
1.18c
ENST00000395127
18c
ENSE00001520668
chr2:
37334538-37333699
840
E2AK2_HUMAN
512-551
40
2
B:512-541
C:512-541
30
30
2.1
YJR007W
1
YJR007W.1
X:451012-451926
915
IF2A_YEAST
1-304
304
1
A:2-174 (gaps)
173
[
close EXON info
]
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d2a19a2 (A:89-174)
2a: SCOP_d2a19a1 (A:2-88)
3a: SCOP_d2a19b_ (B:)
3b: SCOP_d2a19c_ (C:)
View:
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Classes
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)
(
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Folds
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Superfamilies
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)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
eIF2alpha middle domain-like
(7)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d2a19a2
A:89-174
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
automated matches
(46)
Protein domain
:
automated matches
(46)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
2a
d2a19a1
A:2-88
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
3a
d2a19b_
B:
3b
d2a19c_
C:
[
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]
CATH Domains
(4, 6)
Info
all CATH domains
1a: CATH_2a19C01 (C:257-371)
1b: CATH_2a19B01 (B:256-368)
2a: CATH_2a19A02 (A:90-174)
3a: CATH_2a19B02 (B:369-541)
3b: CATH_2a19C02 (C:372-541)
4a: CATH_2a19A01 (A:2-89)
View:
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Baker's yeast (Saccharomyces cerevisiae)
(32)
1a
2a19C01
C:257-371
1b
2a19B01
B:256-368
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Translation initiation factor 2; subunit 1; domain 2
(5)
Baker's yeast (Saccharomyces cerevisiae)
(3)
2a
2a19A02
A:90-174
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Baker's yeast (Saccharomyces cerevisiae)
(21)
3a
2a19B02
B:369-541
3b
2a19C02
C:372-541
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Baker's yeast (Saccharomyces cerevisiae)
(28)
4a
2a19A01
A:2-89
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
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Nucleic
Backbone
Sidechain
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Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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Asym.Unit (113 KB)
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