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2A14
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN INDOLETHYLAMINE N-METHYLTRANSFERASE WITH SAH
Authors
:
A. Dong, H. Wu, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
17 Jun 05 (Deposition) - 28 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sgc, Inmt, Structural Genomics, Structural Genomics Consortium, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wu, A. Dong, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov
The Crystal Structure Of Human Indolethylamine N-Methyltransferase In Complex With Sah.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:200 , GLU A:217 , LYS A:218 , ASN A:250 , ARG A:258 , HOH A:4093 , HOH A:4234
BINDING SITE FOR RESIDUE SO4 A 2003
2
AC2
SOFTWARE
TYR A:20 , TYR A:25 , GLY A:63 , SER A:64 , GLY A:65 , THR A:67 , TYR A:69 , ASP A:85 , PHE A:86 , THR A:87 , ASN A:90 , CYS A:141 , ASP A:142 , VAL A:143 , HIS A:144 , LEU A:163 , LEU A:164 , ALA A:165 , ALA A:169 , HOH A:4050 , HOH A:4064
BINDING SITE FOR RESIDUE SAH A 4001
[
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036991 (D28N, chain A, )
2: VAR_011616 (M205V, chain A, )
3: VAR_061373 (V214M, chain A, )
4: VAR_011617 (G219G, chain A, )
5: VAR_036992 (N246S, chain A, )
6: VAR_036993 (C254C, chain A, )
7: VAR_036994 (R258H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036991
D
28
N
INMT_HUMAN
Polymorphism
4723010
A
D
28
N
2
UniProt
VAR_011616
M
205
V
INMT_HUMAN
Polymorphism
2302339
A
M
205
V
3
UniProt
VAR_061373
V
214
M
INMT_HUMAN
Polymorphism
56800285
A
V
214
M
4
UniProt
VAR_011617
E
219
G
INMT_HUMAN
Polymorphism
2302340
A
G
219
G
5
UniProt
VAR_036992
N
246
S
INMT_HUMAN
Polymorphism
6970210
A
N
246
S
6
UniProt
VAR_036993
F
254
C
INMT_HUMAN
Polymorphism
4720015
A
C
254
C
7
UniProt
VAR_036994
R
258
H
INMT_HUMAN
Polymorphism
6970605
A
R
258
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SAM_MT_NNMT_PNMT_TEMT (A:8-261)
2: NNMT_PNMT_TEMT (A:59-75)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_MT_NNMT_PNMT_TEMT
PS51681
SAM-dependent methyltransferase NNMT/PNMT/TEMT-type profile.
INMT_HUMAN
8-262
1
A:8-261
2
NNMT_PNMT_TEMT
PS01100
NNMT/PNMT/TEMT family of methyltransferases signature.
INMT_HUMAN
59-75
1
A:59-75
[
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Exons
(3, 3)
Info
All Exons
Exon 1.4a (A:5-52)
Exon 1.5a (A:52-121)
Exon 1.6c (A:121-261)
View:
Select:
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All Exon Boundaries
1: Boundary -/1.4a
2: Boundary 1.4a/1.5a
3: Boundary 1.5a/1.6c
4: Boundary 1.6c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000013222
4a
ENSE00000832209
chr7:
30791751-30791920
170
INMT_HUMAN
1-52
52
1
A:5-52
48
1.5a
ENST00000013222
5a
ENSE00002156450
chr7:
30793347-30793554
208
INMT_HUMAN
52-121
70
1
A:52-121
70
1.6c
ENST00000013222
6c
ENSE00001310197
chr7:
30795038-30797218
2181
INMT_HUMAN
121-263
143
1
A:121-261
141
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2a14a1 (A:5-261)
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(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Arylamine N-methyltransferase
(40)
Protein domain
:
Indolethylamine N-methyltransferase, INMT
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2a14a1
A:5-261
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2a14A00 (A:5-261)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Human (Homo sapiens)
(49)
1a
2a14A00
A:5-261
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (51 KB)
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