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1ZZJ
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
STRUCTURE OF THE THIRD KH DOMAIN OF HNRNP K IN COMPLEX WITH 15-MER SSDNA
Authors
:
P. H. Backe, A. C. Messias, R. B. Ravelli, M. Sattler, S. Cusack
Date
:
14 Jun 05 (Deposition) - 09 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Protein-Dna Complex, Structural Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. H. Backe, A. C. Messias, R. B. Ravelli, M. Sattler, S. Cusack
X-Ray Crystallographic And Nmr Studies Of The Third Kh Domain Of Hnrnp K In Complex With Single-Stranded Nucleic Acids
Structure V. 13 1055 2005
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: KH_TYPE_1 (-|-|A:13-77,B:13-77,C:13-77)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KH_TYPE_1
PS50084
Type-1 KH domain profile.
HNRPK_HUMAN
42-104
144-209
387-451
3
-
-
A:13-77
B:13-77
C:13-77
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Exons
(3, 9)
Info
All Exons
Exon 1.16b (A:9-23 (gaps) | B:9-23 (gaps) | C:...)
Exon 1.16e (A:24-80 | B:24-80 | C:24-80)
Exon 1.17g (A:80-83 | B:80-81 | C:80-81)
View:
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All Exon Boundaries
1: Boundary 1.15b/1.16b
2: Boundary 1.16b/1.16e
3: Boundary 1.16e/1.17g
4: Boundary 1.17g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000360384
2b
ENSE00001898395
chr9:
86595165-86595068
98
HNRPK_HUMAN
-
0
0
-
-
1.3
ENST00000360384
3
ENSE00001272310
chr9:
86593367-86593288
80
HNRPK_HUMAN
-
0
0
-
-
1.4
ENST00000360384
4
ENSE00002171703
chr9:
86593194-86593110
85
HNRPK_HUMAN
1-20
20
0
-
-
1.5
ENST00000360384
5
ENSE00001090505
chr9:
86592701-86592604
98
HNRPK_HUMAN
20-52
33
0
-
-
1.6a
ENST00000360384
6a
ENSE00001090498
chr9:
86591966-86591910
57
HNRPK_HUMAN
53-71
19
0
-
-
1.7b
ENST00000360384
7b
ENSE00001090499
chr9:
86590420-86590377
44
HNRPK_HUMAN
72-86
15
0
-
-
1.8
ENST00000360384
8
ENSE00001090504
chr9:
86589504-86589432
73
HNRPK_HUMAN
86-110
25
0
-
-
1.9
ENST00000360384
9
ENSE00001090508
chr9:
86588888-86588817
72
HNRPK_HUMAN
111-134
24
0
-
-
1.10
ENST00000360384
10
ENSE00001090511
chr9:
86588314-86588201
114
HNRPK_HUMAN
135-172
38
0
-
-
1.11
ENST00000360384
11
ENSE00001090515
chr9:
86587887-86587759
129
HNRPK_HUMAN
173-215
43
0
-
-
1.12
ENST00000360384
12
ENSE00001090506
chr9:
86587104-86586797
308
HNRPK_HUMAN
216-318
103
0
-
-
1.13
ENST00000360384
13
ENSE00001090514
chr9:
86586641-86586587
55
HNRPK_HUMAN
318-336
19
0
-
-
1.14a
ENST00000360384
14a
ENSE00001090502
chr9:
86586271-86586188
84
HNRPK_HUMAN
337-364
28
0
-
-
1.15b
ENST00000360384
15b
ENSE00001797019
chr9:
86585827-86585812
16
HNRPK_HUMAN
365-370
6
0
-
-
1.16b
ENST00000360384
16b
ENSE00001090513
chr9:
86585734-86585652
83
HNRPK_HUMAN
370-397
28
3
A:9-23 (gaps)
B:9-23 (gaps)
C:8-23 (gaps)
16
16
17
1.16e
ENST00000360384
16e
ENSE00001090512
chr9:
86585246-86585077
170
HNRPK_HUMAN
398-454
57
3
A:24-80
B:24-80
C:24-80
57
57
57
1.17g
ENST00000360384
17g
ENSE00001829261
chr9:
86584295-86583824
472
HNRPK_HUMAN
454-463
10
3
A:80-83
B:80-81
C:80-81
4
2
2
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1zzja_ (A:)
1b: SCOP_d1zzjb_ (B:)
1c: SCOP_d1zzjc_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Superfamily
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1zzja_
A:
1b
d1zzjb_
B:
1c
d1zzjc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1zzjA00 (A:9-83)
1b: CATH_1zzjC00 (C:8-81)
1c: CATH_1zzjB00 (B:9-81)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S8; Chain: A, domain 1
(139)
Homologous Superfamily
:
[code=3.30.1370.10, no name defined]
(23)
[unclassified]
(8)
1a
1zzjA00
A:9-83
1b
1zzjC00
C:8-81
1c
1zzjB00
B:9-81
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Pfam Domains
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all PFAM domains
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Asym.Unit (44 KB)
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