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1ZY7
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF AN ADENOSINE DEAMINASE THAT ACTS ON RNA (HADAR2) BOUND TO INOSITOL HEXAKISPHOSPHATE (IHP)
Authors
:
M. R. Macbeth, H. L. Schubert, A. P. Vandemark, A. T. Lingam, C. P. Hill, B. L. Bass
Date
:
09 Jun 05 (Deposition) - 13 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Beta Deaminase Motif, Zinc Coordination, Ionsitol Hexakisphosphate, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. R. Macbeth, H. L. Schubert, A. P. Vandemark, A. T. Lingam, C. P. Hill, B. L. Bass
Inositol Hexakisphosphate Is Bound In The Adar2 Core And Required For Rna Editing.
Science V. 309 1534 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: INOSITOL HEXAKISPHOSPHATE (IHPa)
1b: INOSITOL HEXAKISPHOSPHATE (IHPb)
2a: SULFATE ION (SO4a)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IHP
2
Ligand/Ion
INOSITOL HEXAKISPHOSPHATE
2
SO4
1
Ligand/Ion
SULFATE ION
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:394 , CYS A:451 , LYS A:483 , CYS A:516 , HOH A:1274
BINDING SITE FOR RESIDUE ZN A 801
2
AC2
SOFTWARE
HIS B:394 , CYS B:451 , LYS B:483 , CYS B:516 , HOH B:1166
BINDING SITE FOR RESIDUE ZN B 802
3
AC3
SOFTWARE
SER B:384 , ARG B:386 , LYS B:618 , HOH B:1089
BINDING SITE FOR RESIDUE SO4 B 903
4
AC4
SOFTWARE
ASN A:391 , ILE A:397 , ARG A:400 , ARG A:401 , THR A:513 , LYS A:519 , ARG A:522 , GLY A:530 , SER A:531 , LYS A:629 , TYR A:658 , LYS A:662 , TYR A:668 , LYS A:672 , TRP A:687 , GLU A:689 , LYS A:690 , ASP A:695 , HOH A:903 , HOH A:904 , HOH A:908 , HOH A:909 , HOH A:913 , HOH A:914 , HOH A:915 , HOH A:917 , HOH A:925 , HOH A:932 , HOH A:939 , HOH A:993 , HOH A:1004 , HOH A:1017 , HOH A:1055 , HOH A:1066 , HOH A:1276
BINDING SITE FOR RESIDUE IHP A 901
5
AC5
SOFTWARE
ASN B:391 , ILE B:397 , ARG B:400 , ARG B:401 , THR B:513 , LYS B:519 , ARG B:522 , GLY B:530 , SER B:531 , LYS B:629 , TYR B:658 , LYS B:662 , TYR B:668 , LYS B:672 , TRP B:687 , GLU B:689 , LYS B:690 , ASP B:695 , HOH B:905 , HOH B:906 , HOH B:910 , HOH B:911 , HOH B:915 , HOH B:918 , HOH B:921 , HOH B:922 , HOH B:926 , HOH B:932 , HOH B:949 , HOH B:957 , HOH B:961 , HOH B:969 , HOH B:975 , HOH B:990 , HOH B:1036 , HOH B:1050
BINDING SITE FOR RESIDUE IHP B 902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: A_DEAMIN_EDITASE (A:370-697,B:370-697)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
A_DEAMIN_EDITASE
PS50141
Adenosine to inosine editase domain profile.
RED1_HUMAN
370-737
2
A:370-697
B:370-697
[
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Exons
(8, 16)
Info
All Exons
Exon 1.14b (A:306-321 | B:306-321 (gaps))
Exon 1.16 (A:322-360 | B:322-360)
Exon 1.17 (A:360-416 | B:360-416)
Exon 1.18 (A:416-457 | B:416-461)
Exon 1.20 (A:475-522 | B:474-522 (gaps))
Exon 1.21 (A:522-583 | B:522-583)
Exon 1.22 (A:583-642 | B:583-642)
Exon 1.23c (A:643-700 | B:643-700)
View:
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All Exon Boundaries
01: Boundary 1.13c/1.14b
02: Boundary 1.14b/1.16
03: Boundary 1.16/1.17
04: Boundary 1.17/1.18
05: Boundary 1.18/1.19
06: Boundary 1.19/1.20
07: Boundary 1.20/1.21
08: Boundary 1.21/1.22
09: Boundary 1.22/1.23c
10: Boundary 1.23c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.13c
ENST00000360697
13c
ENSE00001507135
chr21:
46591557-46591599
43
RED1_HUMAN
1-10
10
0
-
-
1.14b
ENST00000360697
14b
ENSE00001050989
chr21:
46595645-46596579
935
RED1_HUMAN
10-321
312
2
A:306-321
B:306-321 (gaps)
16
16
1.16
ENST00000360697
16
ENSE00001608449
chr21:
46600245-46600359
115
RED1_HUMAN
322-360
39
2
A:322-360
B:322-360
39
39
1.17
ENST00000360697
17
ENSE00001050991
chr21:
46602500-46602668
169
RED1_HUMAN
360-416
57
2
A:360-416
B:360-416
57
57
1.18
ENST00000360697
18
ENSE00001050987
chr21:
46603277-46603425
149
RED1_HUMAN
416-466
51
2
A:416-457
B:416-461
42
46
1.19
ENST00000360697
19
ENSE00001507134
chr21:
46604389-46604508
120
RED1_HUMAN
466-506
41
0
-
-
1.20
ENST00000360697
20
ENSE00001050983
chr21:
46604838-46605006
169
RED1_HUMAN
506-562
57
2
A:475-522
B:474-522 (gaps)
48
49
1.21
ENST00000360697
21
ENSE00001507133
chr21:
46624470-46624651
182
RED1_HUMAN
562-623
62
2
A:522-583
B:522-583
62
62
1.22
ENST00000360697
22
ENSE00000897018
chr21:
46640751-46640929
179
RED1_HUMAN
623-682
60
2
A:583-642
B:583-642
60
60
1.23c
ENST00000360697
23c
ENSE00001530203
chr21:
46641933-46646475
4543
RED1_HUMAN
683-741
59
2
A:643-700
B:643-700
58
58
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_A_deamin_1zy7B01 (B:370-693)
1b: PFAM_A_deamin_1zy7B02 (B:370-693)
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)
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)
Clan
:
CDA
(39)
Family
:
A_deamin
(1)
Homo sapiens (Human)
(1)
1a
A_deamin-1zy7B01
B:370-693
1b
A_deamin-1zy7B02
B:370-693
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Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
Biol.Unit 2 (66 KB)
Header - Biol.Unit 2
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